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Retrotransposon families in rice - Molecular Genetics and Genomics

  • ️Kikuchi, Fumio
  • ️Fri May 01 1992

References

  • Aeby P, Spicher A, de Chastonay Y, Muller E, Tobler H (1986) Structure and genomic organization of proretrovirus-like elements partially eliminated from the somatic genome ofAscaris lumbricoides. EMBO J 5:3353–3360

    Google Scholar 

  • Bingham P, Zachar Z (1989) Retrotransposons and the FB transposon fromDrosophila melanogaster. In: Berg DE, Howe MM (eds) Mobile DNA. American Society for Microbiology, Washington DC, pp. 485–502

    Google Scholar 

  • Boeke JD, Garfinkel DJ, Styles CA, Fink GR (1985) Ty elements transpose through an RNA intermediate. Cell 40:491–500

    Google Scholar 

  • Boeke J, Garfinkel DJ (1987) Yeast Ty elements as retroviruses. In: Leibowitz MJ, Koltin Y (eds) Viruses of fungi and simple eukaryotes. Marcel Dekker Inc, New Vork, pp. 15–39

    Google Scholar 

  • Camirand A, St-Pierre B, Marineau C, Brisson N (1990) Occurrence of a copia-like transposable element in one of the introns of the potato starch phosphorylase gene. Mol Gen Genet 224:33–39

    Google Scholar 

  • Chang TT (1984) Conservation of rice genetic resources: Luxury or necessity? Science 224:251–256

    Google Scholar 

  • Clare J, Farabaugh P (1985) Nucleotide sequence of a yeast Ty element: evidence for an unusual mechanism of gene expression. Proc Natl Acad Sci USA 82:2829–2833

    Google Scholar 

  • Coen ES, Robbins TP, Almedia J, Hudson A, Carpenter R (1989) Consequences and mechanisms of transposition inAntirrhinum majus. In: Berg DE, Howe MM (eds) Mobile DNA. American Society for Microbiology, Washington DC, pp. 413–436

    Google Scholar 

  • Doolittle RE, Feng D-F, Johnson MS, McClure MA (1989) Origins and evolutionary relationships of retroviruses. Quart Rev Biol 64:1–30

    Google Scholar 

  • Echalier G (1989)Drosophila retrotransposons: interactions with genome. Advances in virus research 36:33–103

    Google Scholar 

  • Eichinger DJ, Boeke J (1988) The DNA intermediate in yeast Ty element transposition copurifies with virus-like particles: cell-free Tyl transposition. Cell 55:955–966

    Google Scholar 

  • Fedoroff NV (1989) Maize transposable elements. In: Berg DE, Howe MM (eds) Mobile DNA. American Society for Microbiology, Washington DC, pp 375–411

    Google Scholar 

  • Feinberg AP, Vogelstein B (1983) A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 132:6–13

    Google Scholar 

  • Finnegan DJ (1985) Transposable elements in eukaryotes. Int Rev Cyt 93:281–326

    Google Scholar 

  • Grandbastien MA, Spielman A, Caboche M (1989) Tntl, a mobile retrovirul-like transposable element of tobacco isolated by plant cell genetics. Nature 337:376–380

    Google Scholar 

  • Green MM (1988) Mobile DNA elements and spontaneous gene mutation. In:Lambert ME, McDonald JF, Weinstein IB (eds) Eukaryotic transposable elements as mutagenic agents. Cold Spring Harbor Laboratory Press, New York, pp. 41–50

    Google Scholar 

  • Harberd NP, Flavell RB, Thompson RD (1987) Identification of a transposon-like insertion in aGlu-1 allele of wheat. Mol Gen Genet 209:326–332

    Google Scholar 

  • Iyengar GAS, Sen SK (1979) Characteristics of nuclear DNA in the genusOryza. Theor Appl Genet 54:219–224

    Google Scholar 

  • Jin YK, Bennetzen JL (1989) Structure and coding properties ofBs1, a maize retrovirus-like transposon. Proc Natl Acad Sci USA 86:6235–6239

    Google Scholar 

  • Johns MA, Babcock MS, Fuerstenberg SM, Fuerstenberg SI, Freeling M, Simpson RB (1989) An unusually compact retrotransposon in maize. Plant Mol Biol 12:633–642

    Google Scholar 

  • Konieczny A, Voytas DF, Cummings MP, Ansubel FM (1991) A superfamily ofArabidopsis italiana retrotransposons. Genetics 127:801–809

    Google Scholar 

  • Kröger B, Horak I (1987) Isolation of novel human retrovirusrelated sequences by hybridization to synthetic oligonucleotides complementary to the tRNAPro primer-binding site. J Virol 61:2071–2075

    Google Scholar 

  • Kuff EL, Feenstra A, Lenders K, Smith L, Hawley R, Hozumi N, Shulman M (1983) Intercisternal A-particle genes as movable elements in the mouse genome. Proc Natl Acad Sci UAS 80:1992–1996

    Google Scholar 

  • McCouch SR, Kochert G, Yu ZH, Wang ZY, Khush GS, Coffman WR, Tanksley SD (1988) Molecular mapping of rice chromosomes. Theor Appl Genet 76:815–829

    Google Scholar 

  • Mellor J, Kingsman AJ, Kingsman SM (1986) Ty, an endogenous retrovirus of yeast? Yeast 2:145–152

    Google Scholar 

  • Messing J (1983) New M13 vectors for cloning. Method Enzymol 101:20–89

    Google Scholar 

  • Morishima H (1984) Wild plants and domestication. In: Tsunoda S, Takahashi N (eds) Biology of rice. Japan Science Press, Tokyo, pp. 3–30

    Google Scholar 

  • Mount SM, Rubin GM (1985) Complete nucleotide sequence of theDrosophila transposable element copia: homology between copia and retroviral proteins. Mol Cell Biol 5:1630–1638

    Google Scholar 

  • Murray MG, Thompson WF (1980) Rapid isolation of high-molecular-weight plant DNA. Nucleic Acids Res 8:4321–4325

    Google Scholar 

  • Paulson KE, Deka N, Schmid CW, Misra R, Schindler CW, Rush MG, Kadyk L, Leinwand L (1985) A transposon-like element in human DNA. Nature 316:359–361

    Google Scholar 

  • Rubin GM (1983) Dispersed repetitive DNAs inDrosophila. In: Shapiro JA (ed) Mobile genetic elements. Academic Press, New York, pp. 329–361

    Google Scholar 

  • Saigo K, Kugimiya W, Matsuo V, Inouye S, Yoshinaka K, Yuki S (1984) Identification of the coding sequence for a reverse transcriptase-like enzyme in a transposable genetic element inDrosophila melanogaster. Nature 312:659–661

    Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular claning: A laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York

    Google Scholar 

  • Shepherd NS, Schwarz-Sommer Z, vel Spalve JB, Gupta M, Wienand U, Saedler H (1984) Similarity of theCinl repetive family ofZea mays to eukaryotic transposable elements. Nature 307:185–187

    Google Scholar 

  • Shepherd RJ (1989) Biochemistry of DNA plant viruses. In: Marcus A (ed) The biochemistry of plants. Academic Press, San Diego pp. 563–616

    Google Scholar 

  • Shimamoto K, Terada R, Izawa T, Fujimoto H (1989). Fertile transgenic rice plants regenerated from transformed protoplasts. Nature 337:274–276

    Google Scholar 

  • Smyth DR, Kalitsis P, Joseph JL, Sentry JW (1989) Plant retrotransposon fromLilium henryi is related toTy3 of yeast and the gypsy group ofDrosophila. Proc Natl Acad Sci USA 86:5015–5019

    Google Scholar 

  • Sprinzl M, Hartman T, Meissner F, Moll J, Vorderwulbecke T (1987) Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res 15:Suppl r53-r188

    Google Scholar 

  • Takahashi N (1984) Differentiation of ecotypes inOryza sativa L. In: Tsunoda S, Takahashi N (eds) Biology of rice. Japan Science Press, Tokyo, pp. 31–67

    Google Scholar 

  • Toh H, Kikuno R, Hayashida H, Miyata T, Kugimiya W, Inouye S, Vuki S, Saigo K (1985) Close structural resemblance between putative polymerase of aDrosophila transposable genetic element 17.6 andpol gene product of Moloney murine leukemia virus. EMBO J 4:1267–1272

    Google Scholar 

  • Varmus H, Brown P (1989) Retroviruses. In: Berg DE, Howe MM (eds) Mobile DNA. American Society for Microbiology, Washington DC, pp. 53–108

    Google Scholar 

  • Végh Z, Vineze E, Kadirov R, Tóth G, Kiss GB (1990) The nucleotide sequence of a nodule-specific gene, Nms-25 ofMedicago sativa: its primary evolution via exon-shuffling and retrotransposon-mediated DNA rearrangements. Plant Mol Biol 15:295–306

    Google Scholar 

  • Voytas DF, Ausubel FM (1988) A copia-like transposable element family inArabidopsis thaliana. Nature 336:242–244

    Google Scholar 

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