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Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation - Nature

  • ️Hannon, Gregory J.
  • ️Sun Sep 24 2006

References

  1. Chan, S. W., Henderson, I. R. & Jacobsen, S. E. Gardening the genome: DNA methylation in Arabidopsis thaliana. Nature Rev. Genet. 6, 351–360 (2005)

    Article  CAS  Google Scholar 

  2. Matzke, M. A. & Birchler, J. A. RNAi-mediated pathways in the nucleus. Nature Rev. Genet. 6, 24–35 (2005)

    Article  CAS  Google Scholar 

  3. Xie, Z. et al. Genetic and functional diversification of small RNA pathways in plants. PLoS Biol. 2, e104 (2004)

    Article  Google Scholar 

  4. Zilberman, D., Cao, X. & Jacobsen, S. E. ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science 299, 716–719 (2003)

    Article  ADS  CAS  Google Scholar 

  5. Chan, S. W. et al. RNA silencing genes control de novo DNA methylation. Science 303, 1336 (2004)

    Article  CAS  Google Scholar 

  6. Zilberman, D. et al. Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Curr. Biol. 14, 1214–1220 (2004)

    Article  CAS  Google Scholar 

  7. Herr, A. J., Jensen, M. B., Dalmay, T. & Baulcombe, D. C. RNA polymerase IV directs silencing of endogenous DNA. Science 308, 118–120 (2005)

    Article  ADS  CAS  Google Scholar 

  8. Onodera, Y. et al. Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 120, 613–622 (2005)

    Article  CAS  Google Scholar 

  9. Li, C. et al. An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell 126, 93–106 (2006)

    Article  CAS  Google Scholar 

  10. Lippman, Z., May, B., Yordan, C., Singer, T. & Martienssen, R. Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification. PLoS Biol. 1, e67 (2003)

    Article  Google Scholar 

  11. Rohila, J. S., Chen, M., Cerny, R. & Fromm, M. E. Improved tandem affinity purification tag and methods for isolation of protein heterocomplexes from plants. Plant J. 38, 172–181 (2004)

    Article  CAS  Google Scholar 

  12. Qi, Y., Denli, A. M. & Hannon, G. J. Biochemical specialization within Arabidopsis RNA silencing pathways. Mol. Cell 19, 421–428 (2005)

    Article  CAS  Google Scholar 

  13. Baumberger, N. & Baulcombe, D. C. Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs. Proc. Natl Acad. Sci. USA 102, 11928–11933 (2005)

    Article  ADS  CAS  Google Scholar 

  14. Hamilton, A., Voinnet, O., Chappell, L. & Baulcombe, D. Two classes of short interfering RNA in RNA silencing. EMBO J. 21, 4671–4679 (2002)

    Article  CAS  Google Scholar 

  15. Singer, T., Yordan, C. & Martienssen, R. A. Robertson’s Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1). Genes Dev. 15, 591–602 (2001)

    Article  CAS  Google Scholar 

  16. Cao, X. & Jacobsen, S. E. Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proc. Natl Acad. Sci. USA 99, (Suppl. 4)16491–16498 (2002)

    Article  ADS  CAS  Google Scholar 

  17. Girard, A., Sachidanandam, R., Hannon, G. & Carmell, M. A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature 442, 199–202 (2006)

    Article  ADS  Google Scholar 

  18. Jurka, J. et al. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet. Genome Res. 110, 462–467 (2005)

    Article  CAS  Google Scholar 

  19. Vaucheret, H., Vazquez, F., Crete, P. & Bartel, D. P. The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev. 18, 1187–1197 (2004)

    Article  CAS  Google Scholar 

  20. Grewal, S. I. & Moazed, D. Heterochromatin and epigenetic control of gene expression. Science 301, 798–802 (2003)

    Article  ADS  CAS  Google Scholar 

  21. Bao, N., Lye, K. W. & Barton, M. K. MicroRNA binding sites in Arabidopsis class III HD-ZIP mRNAs are required for methylation of the template chromosome. Dev. Cell 7, 653–662 (2004)

    Article  CAS  Google Scholar 

  22. Qi, Y. & Hannon, G. J. Uncovering RNAi mechanisms in plants: biochemistry enters the foray. FEBS Lett. 579, 5899–5903 (2005)

    Article  CAS  Google Scholar 

  23. Liu, J. et al. Argonaute2 is the catalytic engine of mammalian RNAi. Science 305, 1437–1441 (2004)

    Article  ADS  CAS  Google Scholar 

  24. Rivas, F. V. et al. Purified Argonaute2 and an siRNA form recombinant human RISC. Nature Struct. Mol. Biol. 12, 340–349 (2005)

    Article  CAS  Google Scholar 

  25. Jacobsen, S. & Meyerowitz, E. Hypermethylated SUPERMAN epigenetic alleles in Arabidopsis. Science 277, 1100–1103 (1997)

    Article  CAS  Google Scholar 

  26. Allen, E., Xie, Z., Gustafson, A. M. & Carrington, J. C. MicroRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121, 207–221 (2005)

    Article  CAS  Google Scholar 

  27. Clough, S. J. & Bent, A. F. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735–743 (1998)

    Article  CAS  Google Scholar 

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