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Role of the polycomb protein EED in the propagation of repressive histone marks - Nature

  • ️Gamblin, Steven J.
  • ️Sun Sep 20 2009

References

  1. Schuettengruber, B., Chourrout, D., Vervoort, M., Leblanc, B. & Cavalli, G. Genome regulation by polycomb and trithorax proteins. Cell 128, 735–745 (2007)

    Article  CAS  Google Scholar 

  2. Czermin, B. et al. Drosophila enhancer of Zeste/ESC complexes have a histone H3 methyltransferase activity that marks chromosomal Polycomb sites. Cell 111, 185–196 (2002)

    Article  CAS  Google Scholar 

  3. Cao, R. et al. Role of histone H3 lysine 27 methylation in Polycomb-group silencing. Science 298, 1039–1043 (2002)

    Article  ADS  CAS  Google Scholar 

  4. Kuzmichev, A., Nishioka, K., Erdjument-Bromage, H., Tempst, P. & Reinberg, D. Histone methyltransferase activity associated with a human multiprotein complex containing the Enhancer of Zeste protein. Genes Dev. 16, 2893–2905 (2002)

    Article  CAS  Google Scholar 

  5. Müller, J. et al. Histone methyltransferase activity of a Drosophila Polycomb group repressor complex. Cell 111, 197–208 (2002)

    Article  Google Scholar 

  6. Nekrasov, M. et al. Pcl-PRC2 is needed to generate high levels of H3–K27 trimethylation at Polycomb target genes. EMBO J. 26, 4078–4088 (2007)

    Article  CAS  Google Scholar 

  7. Sarma, K., Margueron, R., Ivanov, A., Pirrotta, V. & Reinberg, D. Ezh2 requires PHF1 to efficiently catalyze H3 lysine 27 trimethylation in vivo . Mol. Cell. Biol. 28, 2718–2731 (2008)

    Article  CAS  Google Scholar 

  8. Han, Z. et al. Structural basis of EZH2 recognition by EED. Structure 15, 1306–1315 (2007)

    Article  CAS  Google Scholar 

  9. Schiefner, A. et al. Cation-pi interactions as determinants for binding of the compatible solutes glycine betaine and proline betaine by the periplasmic ligand-binding protein ProX from Escherichia coli . J. Biol. Chem. 279, 5588–5596 (2004)

    Article  CAS  Google Scholar 

  10. Kouzarides, T. Chromatin modifications and their function. Cell 128, 693–705 (2007)

    Article  CAS  Google Scholar 

  11. Nekrasov, M., Wild, B. & Muller, J. Nucleosome binding and histone methyltransferase activity of Drosophila PRC2. EMBO Rep. 6, 348–353 (2005)

    Article  CAS  Google Scholar 

  12. Simon, M. D. et al. The site-specific installation of methyl-lysine analogs into recombinant histones. Cell 128, 1003–1012 (2007)

    Article  CAS  Google Scholar 

  13. Tie, F., Stratton, C. A., Kurzhals, R. L. & Harte, P. J. The N terminus of Drosophila ESC binds directly to histone H3 and is required for E(Z)-dependent trimethylation of H3 lysine 27. Mol. Cell. Biol. 27, 2014–2026 (2007)

    Article  CAS  Google Scholar 

  14. Struhl, G. & Brower, D. Early role of the esc+ gene product in the determination of segments in Drosophila . Cell 31, 285–292 (1982)

    Article  CAS  Google Scholar 

  15. Ohno, K., McCabe, D., Czermin, B., Imhof, A. & Pirrotta, V. ESC, ESCL and their roles in Polycomb Group mechanisms. Mech. Dev. 125, 527–541 (2008)

    Article  CAS  Google Scholar 

  16. Kurzhals, R. L., Tie, F., Stratton, C. A. & Harte, P. J. Drosophila ESC-like can substitute for ESC and becomes required for Polycomb silencing if ESC is absent. Dev. Biol. 313, 293–306 (2008)

    Article  CAS  Google Scholar 

  17. Hansen, K. H. et al. A model for transmission of the H3K27me3 epigenetic mark. Nature Cell Biol. 10, 1291–1300 (2008)

    Article  CAS  Google Scholar 

  18. Huang, Y., Fang, J., Bedford, M. T., Zhang, Y. & Xu, R.-M. Recognition of histone H3 lysine-4 methylation by the double tudor domain of JMJD2A. Science 312, 748–751 (2006)

    Article  ADS  CAS  Google Scholar 

  19. Li, H. et al. Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF. Nature 442, 91–95 (2006)

    Article  ADS  CAS  Google Scholar 

  20. Peña, P. V. et al. Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2. Nature 442, 100–103 (2006)

    Article  ADS  Google Scholar 

  21. Southall, S. M., Wong, P. S., Odho, Z., Roe, S. M. & Wilson, J. R. Structural basis for the requirement of additional factors for MLL1 SET domain activity and recognition of epigenetic marks. Mol. Cell 33, 181–191 (2009)

    Article  CAS  Google Scholar 

  22. Verreault, A., Kaufman, P. D., Kobayashi, R. & Stillman, B. Nucleosome assembly by a complex of CAF-1 and acetylated histones H3/H4. Cell 87, 95–104 (1996)

    Article  CAS  Google Scholar 

  23. Murzina, N. V. et al. Structural basis for the recognition of histone H4 by the histone-chaperone RbAp46. Structure 16, 1077–1085 (2008)

    Article  CAS  Google Scholar 

  24. Schwartz, Y. B. & Pirrotta, V. Polycomb complexes and epigenetic states. Curr. Opin. Cell Biol. 20, 266–273 (2008)

    Article  CAS  Google Scholar 

  25. Ringrose, L. & Paro, R. Polycomb/Trithorax response elements and epigenetic memory of cell identity. Development 134, 223–232 (2007)

    Article  CAS  Google Scholar 

  26. Papp, B. & Muller, J. Histone trimethylation and the maintenance of transcriptional ON and OFF states by trxG and PcG proteins. Genes Dev. 20, 2041–2054 (2006)

    Article  CAS  Google Scholar 

  27. Schwartz, Y. B. et al. Genome-wide analysis of Polycomb targets in Drosophila melanogaster . Nature Genet. 38, 700–705 (2006)

    Article  CAS  Google Scholar 

  28. Otwinowski, Z. & Minor, W. Processing of x-ray diffraction data collected in oscillation mode. Methods Enzymol. 267, 307–326 (1997)

    Article  Google Scholar 

  29. Terwilliger, T. C. & Berendzen, J. Automated MAD and MIR structure solution. Acta Crystallogr. D 55, 849–861 (1999)

    Article  CAS  Google Scholar 

  30. Terwilliger, T. C. Maximum-likelihood density modification. Acta Crystallogr. D 56, 965–972 (2000)

    Article  CAS  Google Scholar 

  31. Perrakis, A., Sixma, T. K., Wilson, K. S. & Lamzin, V. S. wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models. Acta Crystallogr. D 53, 448–455 (1997)

    Article  CAS  Google Scholar 

  32. Navaza, J. AMoRe: an automated package for molecular replacement. Acta Crystallogr. A 50, 157–163 (1994)

    Article  Google Scholar 

  33. Collaborative Computational Project. The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D 50, 760–763 (1994)

  34. Brünger, A. T. et al. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr. D 54, 905–921 (1998)

    Article  Google Scholar 

  35. Jones, T. A., Zou, J. Y., Cowan, S. W. & Kjeldgaard, M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47, 110–119 (1991)

    Article  Google Scholar 

  36. Emsley, P. & Cowtan, K. Coot: model-building tools for molecular graphics. Acta Crystallogr. D 60, 2126–2132 (2004)

    Article  Google Scholar 

  37. Luger, K., Rechsteiner, T. J., Flaus, A. J., Waye, M. M. & Richmond, T. J. Characterization of nucleosome core particles containing histone proteins made in bacteria. J. Mol. Biol. 272, 301–311 (1997)

    Article  CAS  Google Scholar 

  38. Margueron, R. et al. Ezh1 and Ezh2 maintain repressive chromatin through different mechanisms. Mol. Cell 32, 503–518 (2008)

    Article  CAS  Google Scholar 

  39. Bischof, J., Maeda, R. K., Hediger, M., Karch, F. & Basler, K. An optimized transgenesis system for Drosophila using germ-line-specific phiC31 integrases. Proc. Natl Acad. Sci. USA 104, 3312–3317 (2007)

    Article  ADS  CAS  Google Scholar 

  40. Bateman, J. R., Lee, A. M. & Wu, C. T. Site-specific transformation of Drosophila via phiC31 integrase-mediated cassette exchange. Genetics 173, 769–777 (2006)

    Article  CAS  Google Scholar 

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