The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster - Nature Genetics
- ️Gibson, Greg
- ️Mon Nov 26 2001
References
Lynch, M. & Walsh, B. Genetics and Analysis of Quantitative Traits (Sinauer Associates, Sunderland, MA, 1998).
Eisen, M.B. & Brown, P.O. DNA arrays for analysis of gene expression. Methods Enzymol. 303, 179–205 (1999).
Wolfinger, R.D. et al. Assessing gene significance from cDNA microarray expression data via mixed models. J. Comput. Biol. (in press).
Kerr, M.K. & Churchill, G.A. Statistical design and the analysis of gene expression microarray data. Genet. Res. 77, 123–128 (2001).
Kerr, M.K., Martin, M. & Churchill, G.A. Analysis of variance for gene expression microarray data. J. Comput. Biol. 7, 819–837 (2001).
Sandberg, R. et al. Regional and strain-specific gene expression mapping in the adult mouse brain. Proc. Natl Acad. Sci. USA 97, 11038–11043 (2000).
Primig, M. et al. The core meiotic transcriptome in budding yeasts. Nature Genet. 26, 415–423 (2000).
Spicer, G.S. Genetic differentiation of Drosophila melanogaster populations as assessed by two-dimensional electrophoresis. Biochem. Genet. 29, 389–401 (1991).
Nuzhdin, S., Pasyukova, E.G., Dilda, C., Zeng, Z.-B. & Mackay, T.F.C. Sex-specific quantitative trait loci affecting longevity in Drosophila melanogaster. Proc. Natl Acad. Sci. USA 94, 9734–9739 (1997).
Chapman, T. & Partridge, L. Female fitness in Drosophila melanogaster: an interaction between the effect of nutrition and of encounter rate with males. Proc. R. Soc. Lond. B 263, 755–759.
Webster, G.C. & Webster, S.L. Specific disappearance of translatable messenger RNA for elongation factor one in aging Drosophila melanogaster. Mech. Ageing. Dev. 24, 335–342 (1984).
Zou, S., Meadows, S., Sharp, L., Jan, L.Y. & Jan, Y.N. Genome-wide study of aging and oxidative stress response in Drosophila melanogaster. Proc. Natl Acad. Sci. USA 97, 13726–13731 (2000).
Leips, J. & Mackay, T.F.C. Quantitative trait loci for life span in Drosophila melanogaster: interactions with genetic background and larval density. Genetics 155, 1773–1788 (2000).
Littell, R.C., Milliken, G.A., Stroup, W.W. & Wolfinger, R.D. SAS System for Mixed Models (SAS Institute, Cary, NC, 1996).
Eisen, M.B., Spellman, P.T., Brown, P.O. & Botstein, D. Cluster analysis and display of genome-wide expression patterns. Proc. Natl Acad. Sci. USA 95, 14863–14868 (1998).
Cochran, W.G. & Cox, G.M. Experimental Designs (Wiley, New York, 1957).
SAS Institute Inc. SAS/STAT Software Version 8 (SAS Institute, Cary, NC, 1999).
Hughes, T.R. et al. Functional discovery via a compendium of expression profiles. Cell 102, 109–126 (2000).
Perrimon, N., Lanjuin, A., Arnold, C. & Noll, E. Zygotic lethal mutations with maternal effect phenotypes in Drosophila melanogaster. II. Loci on the second and third chromosomes identified by P-element-induced mutations. Genetics 144, 1681–1692 (1996).
Andrews, J. et al. Gene discovery using computational and microarray analysis of transcription in the Drosophila melanogaster testis. Genome Res. 10, 2030–2043 (2000).
White, K.P., Rifkin, S.A., Hurban, P. & Hogness, D.S. Microarray analysis of Drosophila development during metamorphosis. Science 286, 2179–2184 (1999).
Long, A.D., Lyman, R.F., Morgan, A.H., Langley, C.H. & Mackay, T.F.C. Both naturally occurring insertions of transposable elements and intermediate frequency polymorphisms at the achaete-scute complex are associated with variation in bristle number in Drosophila melanogaster. Genetics 154,1255–1269 (2000).
Ross, D.T. et al. Systematic variation in gene expression patterns in human cancer cell lines. Nature Genetics 24, 227–235 (2000).
Hiller, M.A., Lin, T.Y., Wood, C. & Fuller, M.T. Developmental regulation of transcription by a tissue-specific TAF homolog. Genes Dev. 15, 1021–1030 (2001).
Mace, M.L. Jr, Montagu, J., Rose, S.D. & McGuinness, G. in Microarray Biochip Technology (ed. Schena, M.) 39–64 (Eaton Publishers, Natick, MA, 2000).