CP2K, the Glossary
CP2K is a freely available (GPL) quantum chemistry and solid state physics program package, written in Fortran 2008, to perform atomistic simulations of solid state, liquid, molecular, periodic, material, crystal, and biological systems.[1]
Table of Contents
28 relations: Ab initio quantum chemistry methods, Austin Model 1, Car–Parrinello molecular dynamics, Computational chemistry, Density functional theory, Energy minimization, Fortran, GNU General Public License, Harris functional, Hartree–Fock method, Linux, List of quantum chemistry and solid-state physics software, Local-density approximation, MacOS, Møller–Plesset perturbation theory, Microsoft Windows, MNDO, Molecular dynamics, Molecular mechanics, Monte Carlo algorithm, PM3 (chemistry), Quantum chemistry, Quantum mechanics, Random phase approximation, Semi-empirical quantum chemistry method, Syntax highlighting, Tight binding, Transition state.
- Chemistry software for Linux
- Density functional theory software
- Free chemistry software
- Free physics software
- Free software programmed in Fortran
- Molecular dynamics software
- Monte Carlo molecular modelling software
- Monte Carlo particle physics software
- Monte Carlo software
Ab initio quantum chemistry methods
Ab initio quantum chemistry methods are computational chemistry methods based on quantum chemistry.
See CP2K and Ab initio quantum chemistry methods
Austin Model 1
Austin Model 1, or AM1, is a semi-empirical method for the quantum calculation of molecular electronic structure in computational chemistry.
Car–Parrinello molecular dynamics
Car–Parrinello molecular dynamics or CPMD refers to either a method used in molecular dynamics (also known as the Car–Parrinello method) or the computational chemistry software package used to implement this method. CP2K and Car–Parrinello molecular dynamics are computational chemistry software, density functional theory software, molecular dynamics software, physics software, science software, scientific simulation software and simulation software.
See CP2K and Car–Parrinello molecular dynamics
Computational chemistry
Computational chemistry is a branch of chemistry that uses computer simulations to assist in solving chemical problems.
See CP2K and Computational chemistry
Density functional theory
Density functional theory (DFT) is a computational quantum mechanical modelling method used in physics, chemistry and materials science to investigate the electronic structure (or nuclear structure) (principally the ground state) of many-body systems, in particular atoms, molecules, and the condensed phases.
See CP2K and Density functional theory
Energy minimization
In the field of computational chemistry, energy minimization (also called energy optimization, geometry minimization, or geometry optimization) is the process of finding an arrangement in space of a collection of atoms where, according to some computational model of chemical bonding, the net inter-atomic force on each atom is acceptably close to zero and the position on the potential energy surface (PES) is a stationary point (described later).
See CP2K and Energy minimization
Fortran
Fortran (formerly FORTRAN) is a third generation, compiled, imperative programming language that is especially suited to numeric computation and scientific computing.
See CP2K and Fortran
GNU General Public License
The GNU General Public License (GNU GPL or simply GPL) is a series of widely used free software licenses, or copyleft, that guarantee end users the four freedoms to run, study, share, and modify the software.
See CP2K and GNU General Public License
Harris functional
In density functional theory (DFT), the Harris energy functional is a non-self-consistent approximation to the Kohn–Sham density functional theory.
See CP2K and Harris functional
Hartree–Fock method
In computational physics and chemistry, the Hartree–Fock (HF) method is a method of approximation for the determination of the wave function and the energy of a quantum many-body system in a stationary state.
See CP2K and Hartree–Fock method
Linux
Linux is both an open-source Unix-like kernel and a generic name for a family of open-source Unix-like operating systems based on the Linux kernel, an operating system kernel first released on September 17, 1991, by Linus Torvalds.
See CP2K and Linux
List of quantum chemistry and solid-state physics software
Quantum chemistry computer programs are used in computational chemistry to implement the methods of quantum chemistry. CP2K and List of quantum chemistry and solid-state physics software are computational chemistry software, density functional theory software, molecular modelling software and physics software.
See CP2K and List of quantum chemistry and solid-state physics software
Local-density approximation
Local-density approximations (LDA) are a class of approximations to the exchange–correlation (XC) energy functional in density functional theory (DFT) that depend solely upon the value of the electronic density at each point in space (and not, for example, derivatives of the density or the Kohn–Sham orbitals).
See CP2K and Local-density approximation
MacOS
macOS, originally Mac OS X, previously shortened as OS X, is an operating system developed and marketed by Apple since 2001.
See CP2K and MacOS
Møller–Plesset perturbation theory
Møller–Plesset perturbation theory (MP) is one of several quantum chemistry post-Hartree–Fock ab initio methods in the field of computational chemistry.
See CP2K and Møller–Plesset perturbation theory
Microsoft Windows
Microsoft Windows is a product line of proprietary graphical operating systems developed and marketed by Microsoft.
See CP2K and Microsoft Windows
MNDO
MNDO, or Modified Neglect of Diatomic Overlap is a semi-empirical method for the quantum calculation of molecular electronic structure in computational chemistry.
See CP2K and MNDO
Molecular dynamics
Molecular dynamics (MD) is a computer simulation method for analyzing the physical movements of atoms and molecules.
See CP2K and Molecular dynamics
Molecular mechanics
Molecular mechanics uses classical mechanics to model molecular systems.
See CP2K and Molecular mechanics
Monte Carlo algorithm
In computing, a Monte Carlo algorithm is a randomized algorithm whose output may be incorrect with a certain (typically small) probability.
See CP2K and Monte Carlo algorithm
PM3 (chemistry)
PM3, or Parametric Method 3, is a semi-empirical method for the quantum calculation of molecular electronic structure in computational chemistry.
Quantum chemistry
Quantum chemistry, also called molecular quantum mechanics, is a branch of physical chemistry focused on the application of quantum mechanics to chemical systems, particularly towards the quantum-mechanical calculation of electronic contributions to physical and chemical properties of molecules, materials, and solutions at the atomic level.
See CP2K and Quantum chemistry
Quantum mechanics
Quantum mechanics is a fundamental theory that describes the behavior of nature at and below the scale of atoms.
See CP2K and Quantum mechanics
Random phase approximation
The random phase approximation (RPA) is an approximation method in condensed matter physics and in nuclear physics.
See CP2K and Random phase approximation
Semi-empirical quantum chemistry method
Semi-empirical quantum chemistry methods are based on the Hartree–Fock formalism, but make many approximations and obtain some parameters from empirical data.
See CP2K and Semi-empirical quantum chemistry method
Syntax highlighting
Syntax highlighting is a feature of text editors that is used for programming, scripting, or markup languages, such as HTML.
See CP2K and Syntax highlighting
Tight binding
In solid-state physics, the tight-binding model (or TB model) is an approach to the calculation of electronic band structure using an approximate set of wave functions based upon superposition of wave functions for isolated atoms located at each atomic site.
Transition state
In chemistry, the transition state of a chemical reaction is a particular configuration along the reaction coordinate.
See also
Chemistry software for Linux
- Avogadro (software)
- BALL
- Blue Obelisk
- CP2K
- Chemistry Development Kit
- CrystalExplorer
- Gabedit
- JChemPaint
- Jmol
- Massively parallel quantum chemistry
- Molden
- Molecular Operating Environment
- Molekel
- Molsketch
- NWChem
- OELib
- Open Babel
- OpenChrom
- PQS (software)
- PSI (computational chemistry)
- PyMOL
- Q-Chem
- QuteMol
- XDrawChem
Density functional theory software
- ABINIT
- Amsterdam Density Functional
- Atomistix ToolKit
- Atomistix Virtual NanoLab
- BigDFT
- CASTEP
- CONQUEST
- CP2K
- Car–Parrinello molecular dynamics
- DMol3
- DP code
- FHI-aims
- FLEUR
- List of quantum chemistry and solid-state physics software
- Machine-learned interatomic potential
- ONETEP
- PARSEC
- Quantum ESPRESSO
- SIESTA (computer program)
- Vienna Ab initio Simulation Package
- WIEN2k
Free chemistry software
- Avogadro (software)
- Bioclipse
- Blue Obelisk
- CP2K
- Chemistry Development Kit
- Coot (software)
- Gabedit
- Ghemical
- JChemPaint
- Jmol
- Massively parallel quantum chemistry
- Molekel
- Molsketch
- NWChem
- Open Babel
- PSI (computational chemistry)
Free physics software
- ABINIT
- BigDFT
- CERN Program Library
- CP2K
- Cadabra (computer program)
- Meep (software)
- MuJoCo
- Ninithi
- Qbox
- ROOT
- Step (software)
- YAMBO code
Free software programmed in Fortran
- ARPACK
- CERN Program Library
- CP2K
- EAS3
- Elmer FEM solver
- FreeMat
- GEANT-3
- LAPACK
- Librsb
- Lis (linear algebra library)
- MDynaMix
- MUMPS (software)
- Physics Analysis Workstation
- SPICE
- Scilab
- XDrawChem
- XFOIL
Molecular dynamics software
- AMBER
- Abalone (molecular mechanics)
- Amsterdam Density Functional
- Ascalaph Designer
- Avizo (software)
- CHARMM
- CP2K
- Car–Parrinello molecular dynamics
- Comparison of nucleic acid simulation software
- Comparison of software for molecular mechanics modeling
- D. E. Shaw Research
- Desmond (software)
- Folding@home
- GROMACS
- GROMOS
- LAMMPS
- List of Folding@home cores
- MBN Explorer
- MDynaMix
- MacroModel
- Molecular Modelling Toolkit
- Molecular design software
- Ms2 (software)
- NAMD
- OpenAtom
- OpenMM
- Orac (MD program)
- PLUMED
- Pydlpoly
- Q (software)
- SHARC molecular dynamics software
- Tinker (software)
- VOTCA
- Winmostar
- X-PLOR
- XMD
- YASARA
Monte Carlo molecular modelling software
- BOSS (molecular mechanics)
- CP2K
- FLUKA
- List of software for Monte Carlo molecular modeling
- MOCADI
- Spartan (chemistry software)
- Tinker (software)
- ToFeT
Monte Carlo particle physics software
- CP2K
- CompHEP
- EGS (program)
- FLUKA
- GEANT-3
- Geant4
- MPMC
- Monte Carlo N-Particle Transport Code
- PYTHIA
- Serpent (software)
- UrQMD
Monte Carlo software
- Abalone (molecular mechanics)
- ArviZ
- Bambi (software)
- CP2K
- EGS (program)
- LaplacesDemon
- Monte Carlo N-Particle Transport Code
- OpenBUGS
- PyMC
- RAMP Simulation Software for Modelling Reliability, Availability and Maintainability
- Serpent (software)
- Stan (software)
- ToFeT
- WinBUGS