CellML, the Glossary
CellML is an XML based markup language for describing mathematical models.[1]
Table of Contents
14 relations: BioPAX, Gene Ontology, Markup language, Mathematical model, MathML, Metadata, Physiome, Procedural programming, Programming language, Resource Description Framework, SBML, Virtual Cell, XLink, XML.
- Mathematical markup languages
BioPAX
BioPAX (Biological Pathway Exchange) is a RDF/OWL-based standard language to represent biological pathways at the molecular and cellular level.
Gene Ontology
The Gene Ontology (GO) is a major bioinformatics initiative to unify the representation of gene and gene product attributes across all species.
Markup language
A markup language is a text-encoding system which specifies the structure and formatting of a document and potentially the relationship between its parts.
See CellML and Markup language
Mathematical model
A mathematical model is an abstract description of a concrete system using mathematical concepts and language.
See CellML and Mathematical model
MathML
Mathematical Markup Language (MathML) is a mathematical markup language, an application of XML for describing mathematical notations and capturing both its structure and content, and is one of a number of mathematical markup languages. CellML and MathML are mathematical markup languages, XML markup languages and XML-based standards.
Metadata (or metainformation) is "data that provides information about other data", but not the content of the data itself, such as the text of a message or the image itself.
Physiome
The physiome of an individual's or species' physiological state is the description of its functional behavior.
Procedural programming
Procedural programming is a programming paradigm, classified as imperative programming, that involves implementing the behavior of a computer program as procedures (a.k.a. functions, subroutines) that call each other.
See CellML and Procedural programming
Programming language
A programming language is a system of notation for writing computer programs.
See CellML and Programming language
Resource Description Framework
The Resource Description Framework (RDF) is a World Wide Web Consortium (W3C) standard originally designed as a data model for metadata. CellML and Resource Description Framework are XML-based standards.
See CellML and Resource Description Framework
SBML
The Systems Biology Markup Language (SBML) is a representation format, based on XML, for communicating and storing computational models of biological processes. CellML and SBML are XML markup languages.
See CellML and SBML
Virtual Cell
Virtual Cell (VCell) is an open-source software platform for modeling and simulation of living organisms, primarily cells.
XLink
XML Linking Language, or XLink, is an XML markup language and W3C specification that provides methods for creating internal and external links within XML documents, and associating metadata with those links. CellML and XLink are XML-based standards.
See CellML and XLink
XML
Extensible Markup Language (XML) is a markup language and file format for storing, transmitting, and reconstructing arbitrary data.
See CellML and XML