Cellular model, the Glossary

Table of Contents

1. 56 relations: Algorithm, Array (data structure), Bifurcation diagram, Bifurcation theory, Biochemical switches in the cell cycle, Biological applications of bifurcation theory, Biological data visualization, Budapest University of Technology and Economics, Cancer, Cell (biology), Cell (journal), Cell cycle, Cell cycle checkpoint, Cell division, Cell membrane, Comparison of software for molecular mechanics modeling, Computer simulation, Cyclin, Cyclin-dependent kinase, Data structure, Deterministic system, Dynamical system, Enzyme, Fixed point (mathematics), G1 phase, G2 phase, Gene regulatory network, Genome, Goldbeter–Koshland kinetics, Hopf bifurcation, In silico, Indiana University, Markus W. Covert, Masaru Tomita, Mathematical and theoretical biology, Mathematical model, Membrane computing, Metabolic network, Metabolism, Metabolome, Michaelis–Menten kinetics, Mycoplasma genitalium, Ordinary differential equation, Proteome, Reaction rate, S phase, Saddle point, Signal transduction, Stanford University, Stochastic process, ... Expand index (6 more) »

2. Scientific models

Algorithm

In mathematics and computer science, an algorithm is a finite sequence of mathematically rigorous instructions, typically used to solve a class of specific problems or to perform a computation.

See Cellular model and Algorithm

Array (data structure)

In computer science, an array is a data structure consisting of a collection of elements (values or variables), of same memory size, each identified by at least one array index or key.

See Cellular model and Array (data structure)

Bifurcation diagram

In mathematics, particularly in dynamical systems, a bifurcation diagram shows the values visited or approached asymptotically (fixed points, periodic orbits, or chaotic attractors) of a system as a function of a bifurcation parameter in the system.

See Cellular model and Bifurcation diagram

Bifurcation theory

Bifurcation theory is the mathematical study of changes in the qualitative or topological structure of a given family of curves, such as the integral curves of a family of vector fields, and the solutions of a family of differential equations.

See Cellular model and Bifurcation theory

Biochemical switches in the cell cycle

A series of biochemical switches control transitions between and within the various phases of the cell cycle.

See Cellular model and Biochemical switches in the cell cycle

Biological applications of bifurcation theory

Biological applications of bifurcation theory provide a framework for understanding the behavior of biological networks modeled as dynamical systems.

See Cellular model and Biological applications of bifurcation theory

Biological data visualization

Biological data visualization is a branch of bioinformatics concerned with the application of computer graphics, scientific visualization, and information visualization to different areas of the life sciences. Cellular model and Biological data visualization are bioinformatics.

See Cellular model and Biological data visualization

Budapest University of Technology and Economics

The Budapest University of Technology and Economics (Budapesti Műszaki és Gazdaságtudományi Egyetem or in short italic), official abbreviation BME, is a public research university located in Budapest, Hungary.

See Cellular model and Budapest University of Technology and Economics

Cancer

Cancer is a group of diseases involving abnormal cell growth with the potential to invade or spread to other parts of the body.

See Cellular model and Cancer

Cell (biology)

The cell is the basic structural and functional unit of all forms of life.

See Cellular model and Cell (biology)

Cell (journal)

Cell is a peer-reviewed scientific journal publishing research papers across a broad range of disciplines within the life sciences.

See Cellular model and Cell (journal)

Cell cycle

The cell cycle, or cell-division cycle, is the sequential series of events that take place in a cell that causes it to divide into two daughter cells.

See Cellular model and Cell cycle

Cell cycle checkpoint

Cell cycle checkpoints are control mechanisms in the eukaryotic cell cycle which ensure its proper progression.

See Cellular model and Cell cycle checkpoint

Cell division

Cell division is the process by which a parent cell divides into two daughter cells.

See Cellular model and Cell division

Cell membrane

The cell membrane (also known as the plasma membrane or cytoplasmic membrane, and historically referred to as the plasmalemma) is a biological membrane that separates and protects the interior of a cell from the outside environment (the extracellular space).

See Cellular model and Cell membrane

Comparison of software for molecular mechanics modeling

This is a list of computer programs that are predominantly used for molecular mechanics calculations.

See Cellular model and Comparison of software for molecular mechanics modeling

Computer simulation

Computer simulation is the process of mathematical modelling, performed on a computer, which is designed to predict the behaviour of, or the outcome of, a real-world or physical system.

See Cellular model and Computer simulation

Cyclin

Cyclins are proteins that control the progression of a cell through the cell cycle by activating cyclin-dependent kinases (CDK).

See Cellular model and Cyclin

Cyclin-dependent kinase

Cyclin-dependent kinases (CDKs) are a predominant group of serine/threonine protein kinases involved in the regulation of the cell cycle and its progression, ensuring the integrity and functionality of cellular machinery.

See Cellular model and Cyclin-dependent kinase

Data structure

In computer science, a data structure is a data organization, and storage format that is usually chosen for efficient access to data.

See Cellular model and Data structure

Deterministic system

In mathematics, computer science and physics, a deterministic system is a system in which no randomness is involved in the development of future states of the system.

See Cellular model and Deterministic system

Dynamical system

In mathematics, a dynamical system is a system in which a function describes the time dependence of a point in an ambient space, such as in a parametric curve.

See Cellular model and Dynamical system

Enzyme

Enzymes are proteins that act as biological catalysts by accelerating chemical reactions.

See Cellular model and Enzyme

Fixed point (mathematics)

In mathematics, a fixed point (sometimes shortened to fixpoint), also known as an invariant point, is a value that does not change under a given transformation.

See Cellular model and Fixed point (mathematics)

G1 phase

The G1 phase, gap 1 phase, or growth 1 phase, is the first of four phases of the cell cycle that takes place in eukaryotic cell division.

See Cellular model and G1 phase

G2 phase

G2 phase, Gap 2 phase, or Growth 2 phase, is the third subphase of interphase in the cell cycle directly preceding mitosis.

See Cellular model and G2 phase

Gene regulatory network

A gene (or genetic) regulatory network (GRN) is a collection of molecular regulators that interact with each other and with other substances in the cell to govern the gene expression levels of mRNA and proteins which, in turn, determine the function of the cell. Cellular model and gene regulatory network are systems biology.

See Cellular model and Gene regulatory network

Genome

In the fields of molecular biology and genetics, a genome is all the genetic information of an organism.

See Cellular model and Genome

Goldbeter–Koshland kinetics

The Goldbeter–Koshland kinetics Zoltan Szallasi, Jörg Stelling, Vipul Periwal: System Modeling in Cellular Biology.

See Cellular model and Goldbeter–Koshland kinetics

Hopf bifurcation

In the mathematical theory of bifurcations, a Hopf bifurcation is a critical point where, as a parameter changes, a system's stability switches and a periodic solution arises.

See Cellular model and Hopf bifurcation

In silico

In biology and other experimental sciences, an in silico experiment is one performed on a computer or via computer simulation software.

See Cellular model and In silico

Indiana University

Indiana University (IU) is a system of public universities in the U.S. state of Indiana.

See Cellular model and Indiana University

Markus W. Covert

Markus W. Covert (born April 24, 1973) is a researcher and professor of bioengineering at Stanford University who led the simulation of the first organism in software.

See Cellular model and Markus W. Covert

Masaru Tomita

is a Japanese scientist in the fields of systems biology and computer science, best known as the founder of the E-Cell simulation system and/or the inventor of GLR parser algorithm.

See Cellular model and Masaru Tomita

Mathematical and theoretical biology

Mathematical and theoretical biology, or biomathematics, is a branch of biology which employs theoretical analysis, mathematical models and abstractions of living organisms to investigate the principles that govern the structure, development and behavior of the systems, as opposed to experimental biology which deals with the conduction of experiments to test scientific theories. Cellular model and mathematical and theoretical biology are systems biology.

See Cellular model and Mathematical and theoretical biology

Mathematical model

A mathematical model is an abstract description of a concrete system using mathematical concepts and language.

See Cellular model and Mathematical model

Membrane computing

Membrane computing (or MC) is an area within computer science that seeks to discover new computational models from the study of biological cells, particularly of the cellular membranes.

See Cellular model and Membrane computing

A metabolic network is the complete set of metabolic and physical processes that determine the physiological and biochemical properties of a cell.

See Cellular model and Metabolic network

Metabolism (from μεταβολή metabolē, "change") is the set of life-sustaining chemical reactions in organisms.

See Cellular model and Metabolism

The metabolome refers to the complete set of small-molecule chemicals found within a biological sample. Cellular model and metabolome are bioinformatics and systems biology.

See Cellular model and Metabolome

Michaelis–Menten kinetics

In biochemistry, Michaelis–Menten kinetics, named after Leonor Michaelis and Maud Menten, is the simplest case of enzyme kinetics, applied to enzyme-catalysed reactions of one substrate and one product.

See Cellular model and Michaelis–Menten kinetics

Mycoplasma genitalium

Mycoplasma genitalium (also known as MG, Mgen, or since 2018, Mycoplasmoides genitalium) is a sexually transmitted, small and pathogenic bacterium that lives on the mucous epithelial cells of the urinary and genital tracts in humans.

See Cellular model and Mycoplasma genitalium

Ordinary differential equation

In mathematics, an ordinary differential equation (ODE) is a differential equation (DE) dependent on only a single independent variable.

See Cellular model and Ordinary differential equation

Proteome

The proteome is the entire set of proteins that is, or can be, expressed by a genome, cell, tissue, or organism at a certain time.

See Cellular model and Proteome

Reaction rate

The reaction rate or rate of reaction is the speed at which a chemical reaction takes place, defined as proportional to the increase in the concentration of a product per unit time and to the decrease in the concentration of a reactant per unit time.

See Cellular model and Reaction rate

S phase

S phase (Synthesis phase) is the phase of the cell cycle in which DNA is replicated, occurring between G1 phase and G2 phase.

See Cellular model and S phase

Saddle point

In mathematics, a saddle point or minimax point is a point on the surface of the graph of a function where the slopes (derivatives) in orthogonal directions are all zero (a critical point), but which is not a local extremum of the function.

See Cellular model and Saddle point

Signal transduction

Signal transduction is the process by which a chemical or physical signal is transmitted through a cell as a series of molecular events.

See Cellular model and Signal transduction

Stanford University

Stanford University (officially Leland Stanford Junior University) is a private research university in Stanford, California.

See Cellular model and Stanford University

Stochastic process

In probability theory and related fields, a stochastic or random process is a mathematical object usually defined as a sequence of random variables in a probability space, where the index of the sequence often has the interpretation of time.

See Cellular model and Stochastic process

Systems biology

Systems biology is the computational and mathematical analysis and modeling of complex biological systems. Cellular model and systems biology are bioinformatics.

See Cellular model and Systems biology

Transcriptome

The transcriptome is the set of all RNA transcripts, including coding and non-coding, in an individual or a population of cells.

See Cellular model and Transcriptome

UConn Health

UConn Health is a healthcare system and hospital, and branch of the University of Connecticut that oversees clinical care, advanced biomedical research, and academic education in medicine.

See Cellular model and UConn Health

University of Oxford

The University of Oxford is a collegiate research university in Oxford, England.

See Cellular model and University of Oxford

Vector field

In vector calculus and physics, a vector field is an assignment of a vector to each point in a space, most commonly Euclidean space \mathbb^n.

See Cellular model and Vector field

Virginia Tech

Virginia Tech (VT), officially the Virginia Polytechnic Institute and State University (VPI), is a public land-grant research university with its main campus in Blacksburg, Virginia.

See Cellular model and Virginia Tech

See also

Scientific models

• Analogical models
• Big Bang
• Biological models
• Causal model
• Cellular model
• Color models
• Compartmental models in epidemiology
• Cosmological phase transition
• DART radiative transfer model
• Database models
• Digital elevation models
• Dynamic global vegetation model
• Flail space model
• Fuel model
• GRSI model
• Gamma-Re Transition Model
• Geocentric model
• Krogh model
• Lambda-CDM model
• Maxwell's thermodynamic surface
• Microscale and macroscale models
• MuSIASEM
• Onion model
• Physical models
• Rain-out model
• Runoff model (reservoir)
• Simulation software
• Spekkens toy model
• Surrogate model
• Swiss cheese model
• UPA model
• Wilson Cycle

References

[1] https://en.wikipedia.org/wiki/Cellular_model

Also known as Cell cycle mathematical model, Computer model of a cell.

, Systems biology, Transcriptome, UConn Health, University of Oxford, Vector field, Virginia Tech.