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Membranome database, the Glossary

Index Membranome database

Membranome database provides structural and functional information about more than 6000 single-pass (bitopic) transmembrane proteins from Homo sapiens, Arabidopsis thaliana, Dictyostelium discoideum, Saccharomyces cerevisiae, Escherichia coli and Methanocaldococcus jannaschii.[1]

Table of Contents

  1. 27 relations: Alpha helix, AlphaFold, Arabidopsis thaliana, Biochimica et Biophysica Acta, Bioinformatics (journal), Biopolymers (journal), Dictyostelium discoideum, Escherichia coli, Human, Journal of Biomolecular NMR, Journal of Molecular Biology, Membrane topology, Methanocaldococcus jannaschii, Multicellular organism, Nucleic Acids Research, Protein complex, Protein Data Bank, Protein domain, Protein primary structure, Protein Science, Protein structure, Protein targeting, Saccharomyces cerevisiae, Scientific Reports, Signal transduction, Single-pass membrane protein, University of Michigan College of Pharmacy.

  2. Model organism databases

Alpha helix

An alpha helix (or α-helix) is a sequence of amino acids in a protein that are twisted into a coil (a helix).

See Membranome database and Alpha helix

AlphaFold

AlphaFold is an artificial intelligence (AI) program developed by DeepMind, a subsidiary of Alphabet, which performs predictions of protein structure.

See Membranome database and AlphaFold

Arabidopsis thaliana

Arabidopsis thaliana, the thale cress, mouse-ear cress or arabidopsis, is a small plant from the mustard family (Brassicaceae), native to Eurasia and Africa.

See Membranome database and Arabidopsis thaliana

Biochimica et Biophysica Acta

Biochimica et Biophysica Acta (BBA) is a peer-reviewed scientific journal in the field of biochemistry and biophysics that was established in 1947.

See Membranome database and Biochimica et Biophysica Acta

Bioinformatics (journal)

Bioinformatics is a biweekly peer-reviewed scientific journal covering research and software in bioinformatics and computational biology.

See Membranome database and Bioinformatics (journal)

Biopolymers (journal)

Biopolymers is a biweekly peer-reviewed scientific journal covering the study of biopolymers from a biochemical and biophysical perspective.

See Membranome database and Biopolymers (journal)

Dictyostelium discoideum

Dictyostelium discoideum is a species of soil-dwelling amoeba belonging to the phylum Amoebozoa, infraphylum Mycetozoa.

See Membranome database and Dictyostelium discoideum

Escherichia coli

Escherichia coliWells, J. C. (2000) Longman Pronunciation Dictionary.

See Membranome database and Escherichia coli

Human

Humans (Homo sapiens, meaning "thinking man") or modern humans are the most common and widespread species of primate, and the last surviving species of the genus Homo.

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Journal of Biomolecular NMR

The Journal of Biomolecular NMR publishes research on technical developments and innovative applications of nuclear magnetic resonance spectroscopy for the study of structure and dynamic properties of biopolymers in solution, liquid crystals, solids and mixed environments.

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Journal of Molecular Biology

The Journal of Molecular Biology is a biweekly peer-reviewed scientific journal covering all aspects of molecular biology.

See Membranome database and Journal of Molecular Biology

Membrane topology

Topology of a transmembrane protein refers to locations of N- and C-termini of membrane-spanning polypeptide chain with respect to the inner or outer sides of the biological membrane occupied by the protein.

See Membranome database and Membrane topology

Methanocaldococcus jannaschii

Methanocaldococcus jannaschii (formerly Methanococcus jannaschii) is a thermophilic methanogenic archaean in the class Methanococci.

See Membranome database and Methanocaldococcus jannaschii

Multicellular organism

A multicellular organism is an organism that consists of more than one cell, unlike unicellular organisms.

See Membranome database and Multicellular organism

Nucleic Acids Research

Nucleic Acids Research is an open-access peer-reviewed scientific journal published since 1974 by the Oxford University Press.

See Membranome database and Nucleic Acids Research

Protein complex

A protein complex or multiprotein complex is a group of two or more associated polypeptide chains.

See Membranome database and Protein complex

Protein Data Bank

The Protein Data Bank (PDB) is a database for the three-dimensional structural data of large biological molecules such as proteins and nucleic acids, which is overseen by the Worldwide Protein Data Bank (wwPDB). Membranome database and protein Data Bank are biological databases.

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Protein domain

In molecular biology, a protein domain is a region of a protein's polypeptide chain that is self-stabilizing and that folds independently from the rest.

See Membranome database and Protein domain

Protein primary structure

Protein primary structure is the linear sequence of amino acids in a peptide or protein.

See Membranome database and Protein primary structure

Protein Science

Protein Science is a peer-reviewed scientific journal covering research on the structure, function, and biochemical significance of proteins, their role in molecular and cell biology, genetics, and evolution, and their regulation and mechanisms of action.

See Membranome database and Protein Science

Protein structure

Protein structure is the three-dimensional arrangement of atoms in an amino acid-chain molecule.

See Membranome database and Protein structure

Protein targeting

Protein targeting or protein sorting is the biological mechanism by which proteins are transported to their appropriate destinations within or outside the cell.

See Membranome database and Protein targeting

Saccharomyces cerevisiae

Saccharomyces cerevisiae (brewer's yeast or baker's yeast) is a species of yeast (single-celled fungal microorganisms).

See Membranome database and Saccharomyces cerevisiae

Scientific Reports

Scientific Reports is a peer-reviewed open-access scientific mega journal published by Nature Portfolio, covering all areas of the natural sciences.

See Membranome database and Scientific Reports

Signal transduction

Signal transduction is the process by which a chemical or physical signal is transmitted through a cell as a series of molecular events.

See Membranome database and Signal transduction

Single-pass membrane protein

A single-pass membrane protein also known as single-spanning protein or bitopic protein is a transmembrane protein that spans the lipid bilayer only once. Membranome database and single-pass membrane protein are single-pass transmembrane proteins.

See Membranome database and Single-pass membrane protein

University of Michigan College of Pharmacy

The University of Michigan College of Pharmacy is the pharmacy school of the University of Michigan.

See Membranome database and University of Michigan College of Pharmacy

See also

Model organism databases

References

[1] https://en.wikipedia.org/wiki/Membranome_database