| Title
|
Prefix
|
Description
|
Official page
|
| Agronomy Ontology
|
AGRO
|
Ontology of concepts relevant to agronomy experiments.
|
[1]
|
| An ontology of core ecological entities
|
ECOCORE
|
An ontology for ecological entities.
|
[2]
|
| Anatomical Entity Ontology
|
AEO
|
Ontology of anatomical structures that expand CARO, the Common Anatomy Reference Ontology.
|
[3]
|
| Antibiotic Resistance Ontology
|
ARO
|
Ontology for antibiotic resistance genes and mutations.
|
[4]
|
| Apollo Structured Vocabulary [1]
|
APOLLO-SV
|
Ontology for enabling interoperability of epidemic models and public health application software.
|
[5]
|
| Ascomycete phenotype ontology
|
APO
|
A structured controlled vocabulary for the phenotypes of Ascomycete fungi.
|
[6]
|
| Basic Formal Ontology[2]
|
BFO
|
The upper-level ontology upon which OBO Foundry ontologies are built.
|
[7]
|
| Beta Cell Genomics Ontology
|
BCGO
|
An application ontology built for beta cell genomic studies.
|
[8]
|
| Biological Collections Ontology [3]
|
BCO
|
An ontology for biodiversity data.
|
[9]
|
| Biological Imaging Methods Ontology
|
FBBI
|
Ontology for methods involved in biomedical imaging, including preparation and acquisition.
|
[10]
|
| Biological Spatial Ontology
|
BSPO
|
An ontology for representing spatial concepts used in biology.
|
[11]
|
| BRENDA tissue / enzyme source
|
BTO
|
An ontology for the source of enzymes.
|
[12]
|
| C. elegans development ontology (see WormBase)
|
WBLS
|
An ontology for the development of Caenorhabditis elegans.
|
[13]
|
| C. elegans Gross Anatomy Ontology (see WormBase)
|
WBBT
|
An ontology for the anatomy of Caenorhabditis elegans.
|
[14]
|
| C. elegans phenotype (see WormBase)
|
WBPHENOTYPE
|
An ontology for the phenotypes of Caenorhabditis elegans.
|
[15]
|
| Cardiovascular Disease Ontology
|
CVDO
|
An ontology for concepts related to cardiovascular diseases.
|
[16]
[17]
|
| Cell Line Ontology [4]
|
CLO
|
Ontology to describe cell lines.
|
[18]
[19]
|
| Cell Ontology [5]
|
CL
|
Ontology for metazoan cell types.
|
[20]
[21]
|
| Chemical Entities of Biological Interest
|
CHEBI
|
Ontology of small molecular entities of biological interest.
|
[22]
|
| Chemical Information Ontology [6]
|
CHEMINF
|
Ontology for descriptors used in chemoinformatics databases.
|
[23]
[24]
|
| Chemical Methods Ontology
|
CHMO
|
An ontology for the methods used in chemical experiments.
|
[25]
|
| Clinical LABoratory Ontology
|
LABO
|
An ontology of prescriptions and reports in clinical laboratories.
|
[26]
|
| Clinical measurement ontology [7]
|
CMO
|
Ontology to classify clinical measurements of experimental animals.
|
[27]
|
| Common Anatomy Reference Ontology [8]
|
CARO
|
An ontology to improve interoperability between anatomy ontologies for different organisms.
|
[28]
|
| Comparative Data Analysis Ontology [9]
|
CDAO
|
Ontology of concepts and relations relevant to evolutionary comparative analysis, such as phylogenetic trees.
|
[29]
[30]
|
| Confidence Information Ontology [10]
|
CIO
|
An ontology to describe confidence information in sequence annotations.
|
[31]
|
| Contributor Role Ontology
|
CRO
|
An ontology for the diverse roles behind a scientific research article.
|
[32]
[33]
|
| Ctenophore Ontology
|
CTENO
|
An anatomical and developmental ontology for ctenophores (Comb Jellies).
|
[34]
|
| Dictyostelium discoideum anatomy[11]
|
DDANAT
|
A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum.
|
[35]
|
| Dictyostelium discoideum phenotype ontology
|
DDPHENO
|
An ontology for phenotypes of the slime-mould Dictyostelium discoideum.
|
[36]
|
| Drosophila development
|
FBDV
|
An ontology of the development of Drosophila melanogaster.
|
[37]
|
| Drosophila gross anatomy[12]
|
FBBT
|
An ontology for the anatomy of Drosophila melanogaster.
|
[38]
|
| Drosophila Phenotype Ontology
|
FBCV
|
An ontology of common Drosophila phenotypes.
|
[39]
|
| Drug-drug Interaction and Drug-drug Interaction Evidence Ontology [13]
|
DIDEO
|
Ontology for drug–drug interaction evidence.
|
[40]
|
| Evidence & Conclusion Ontology[14]
|
ECO
|
An ontology for types evidence used to support scientific claims.
|
[41]
|
| eagle-i resource ontology
|
ERO
|
An ontology of research equipment, protocols and consumables.
|
[42]
[43]
|
| Emotion Ontology [15]
|
MFOEM
|
An ontology of emotions, moods, and other kinds of feelings.
|
[44]
|
| Environment Ontology [16]
|
ENVO
|
Ontology of environmental features and habitats.
|
[45]
|
| Experimental condition ontology [17]
|
XCO
|
An ontology for the different conditions in which experimental measurements are taken.
|
[46]
|
| Exposure Ontology [18]
|
EXO
|
Ontology to describe exposure to environmental factors (such as cigarette smoke) that might influence clinical outcomes.
|
[47]
|
| Fission Yeast Phenotype Ontology[19]
|
FYPO
|
An ontology of phenotypes of fission yeast.
|
[48]
[49]
|
| Flora Phenotype Ontology [20]
|
FLOPO
|
An ontology for traits and phenotypes of flowering plants.
|
[50]
|
| FlyBase Controlled Vocabulary
|
FBCV
|
An ontology to support the FlyBase project.
|
[51]
|
| Food Ontology [21]
|
FOODON
|
An ontology to represent entities that play a food role or related to foods.
|
[52]
|
| Foundational Model of Anatomy Ontology (subset)
|
FMAO
|
Subset of the Foundational Model of Anatomy Ontology.
|
[53]
|
| Fungal Anatomy Ontology
|
FAO
|
An ontology for the anatomy of fungi.
|
[54]
|
| Gazetteer
|
GAZ
|
An ontology that acts as a gazetteer (geographical dictionary).
|
[55]
|
| Gene Ontology
|
GO
|
An ontology for describing the function of genes and gene products.
|
[56]
[57]
|
| Genomic Epidemiology Ontology [22]
|
GENEPIO
|
An ontology for foodborne pathogens and associated outbreaks.
|
[58]
|
| Genotype Ontology
|
GENO
|
An ontology for genotypes and their related phenotypes and diseases.
|
[59]
|
| Geographical Entity Ontology
|
GEO
|
An ontology of geographical entities.
|
[60]
|
| Glycan Naming Ontology [23]
|
GNOME
|
An ontology for glycans based on GlyTouCan.
|
[61]
|
| Homology Ontology [24]
|
HOM
|
An ontology for concepts related to homology.
|
[62]
|
| Human Ancestry Ontology [25]
|
HANCESTRO
|
An ontology of ancestry concepts used in the NHGRI-EBI Catalog of published genome-wide association studies.
|
[63]
|
| Human Developmental Stages
|
HSAPDV
|
An ontology of stages of the human life.
|
[64]
|
| Human Disease Ontology
|
DO
|
An ontology for describing human diseases.
|
[65]
|
| Human Phenotype Ontology
|
HPO
|
An ontology for human phenotypes in hereditary and non-hereditary diseases.
|
[66]
[67]
|
| HUPO-PSI cross-linking and derivatization reagents controlled vocabulary
|
PSI-MS
|
An ontology for reagents used to cross-link molecules in mass spectrometry experiments.
|
[68]
|
| Hymenoptera Anatomy Ontology [26]
|
HAO
|
An ontology of the anatomy of the Hymenoptera (bees, wasps, and ants).
|
[69]
|
| Hypertension Ontology
|
HTN
|
An ontology for clinical data about hypertension.
|
[70]
|
| Infectious Disease Ontology [27]
|
IDO
|
A set of ontologies related to infectious diseases.
|
[71]
|
| Information Artifact Ontology [28]
|
IAO
|
An ontology of information entities.
|
[72]
|
| Informed Consent Ontology
|
ICO
|
An ontology for concepts related to informed consent, such as forms and policies.
|
[73]
|
| Integrative and Conjugative Element Ontology
|
ICEO
|
An ontology of bacterial integrative and conjugative elements (ICEs).
|
[74]
|
| Interaction Network Ontology [29]
|
INO
|
An ontology for gene-gene interactions.
|
[75]
|
| Malaria Ontology [30]
|
IDOMAL
|
An ontology for concepts related to malaria.
|
[76]
|
| Mammalian Feeding Muscle Ontology
|
MFMO
|
An ontology for the mammalian muscles that play a role in feeding behavior.
|
[77]
|
| Mammalian Phenotype Ontology
|
MP
|
Standard terms for annotating mammalian phenotypic data.
|
[78]
|
| Mass spectrometry ontology
|
MI
|
An ontology for concepts to describe mass spectrometry in the context of proteomics.
|
[79]
|
| Measurement method ontology
|
MMO
|
An ontology for methods of clinical and laboratory measurements.
|
[80]
|
| Medaka Developmental Stages
|
OlatDv
|
An ontology of life stages for the medaka fish.
|
[81]
|
| Mental Disease Ontology [31]
|
MFOMD
|
An ontology for mental diseases.
|
[82]
|
| Mental Functioning Ontology [31]
|
MFO
|
An ontology for concepts related to mental functioning.
|
[83]
[84]
|
| MHC Restriction Ontology [32]
|
MRO
|
An ontology for Major Histocompatibility Complex (MHC) restriction in experiments.
|
[85]
|
| MIAPA Ontology [33]
|
MIAPA
|
An ontology for phylogenetic data.
|
[86]
|
| Microbial Conditions Ontology [34]
|
MCO
|
An ontology for microbial growth conditions.
|
[87]
|
| Minimum PDDI Information Ontology
|
MPIO
|
An ontology of the minimum information to describe drug–drug interactions.
|
[88]
|
| Molecular Interactions Controlled Vocabulary
|
MI
|
An ontology for concepts related to the study of protein-protein interactions.
|
[89]
|
| Mondo Disease Ontology
|
MONDO
|
An ontology for the integration of information on disease.
|
[90]
|
| Mosquito gross anatomy ontology (VectorBase)
|
TGMA
|
An ontology for the anatomy of mosquitoes.
|
[91]
|
| Mouse adult gross anatomy ontology
|
EMAPA
|
An ontology for the adult anatomy of the mouse (Mus).
|
[92]
|
| Mouse Developmental Stages
|
MmusDv
|
An ontology of stages of the mouse (Mus) life.
|
[93]
|
| Mouse gross anatomy and development, timed
|
EMAP
|
Ontology of anatomical structures of the mouse (Mus musculus).
|
[94]
|
| Mouse Pathology Ontology [35]
|
MPATH
|
An ontology of mouse pathology phenotypes.
|
[95]
|
| Name Reaction Ontology
|
RXNO
|
An ontology for organic reactions in organic synthesis.
|
[96]
|
| NCBI organismal classification [36]
|
NCBITaxon
|
An ontology representation of the NCBI organismal taxonomy.
|
[97]
|
| Neuro Behavior Ontology
|
NBO
|
An ontology of behavioral phenotypes of animals.
|
[98]
|
| NOMEN - A nomenclatural ontology for biological names [37]
|
NOMEN
|
An ontology of the rules of nomenclature for biological names.
|
[99]
|
| Non-Coding RNA Ontology [38]
|
NCRO
|
An ontology for non-coding RNA function.
|
[100]
|
| Ontologized MIABIS
|
OMIABIS
|
An ontological version of MIABIS (Minimum Information About BIobank data Sharing).
|
[101]
|
| Ontology for Biobanking [39]
|
OBIB
|
An ontology for concepts related to biobanks.
|
[102]
|
| Ontology for Biomedical Investigations
|
OBI
|
An ontology which describes biological processes, cellular components and molecular functions in living organisms.
|
[103]
|
| Ontology for General Medical Science
|
OGMS
|
An ontology for general aspects of medicine, with a focus on cancer.
|
[104]
|
| Ontology for Parasite LifeCycle [40]
|
OPL
|
A reference ontology for parasite life cycle stages.
|
[105]
|
| Ontology of Adverse Events [41]
|
OAE
|
An ontology for adverse events of drug regimens.
|
[106]
|
| Ontology of Arthropod Circulatory Systems [42]
|
OARCS
|
An ontology for the circulatory systems of arthropods.
|
[107]
|
| Ontology of Biological and Clinical Statistics [43]
|
OBCS
|
An ontology to describe statistical tools and methods used in biomedical investigation.
|
[108]
|
| Ontology of Biological Attributes
|
OBA
|
An ontology for biological traits.
|
[109]
|
| Ontology of Medically Related Social Entities [44]
|
OMRSE
|
An ontology for entities (roles and organizations) related to healthcare.
|
[110]
[111]
|
| Ontology of Microbial Phenotypes [45]
|
OMP
|
An ontology of phenotypes of microorganisms.
|
[112]
|
| Ontology of Organizational Structures of Trauma centers and Trauma systems
|
OOSTT
|
An ontology for the organizational structures of trauma centers and trauma systems.
|
[113]
|
| Ontology of Precision Medicine and Investigation
|
OPMI
|
An ontology for concepts related to precision medicine.
|
[114]
|
| Ontology of Prokaryotic Phenotypic and Metabolic Characters [46]
|
MICRO
|
An ontology of prokaryotic phenotypic and metabolic characters.
|
[115]
|
| Ontology of RNA Sequencing
|
ORNASEQ
|
An ontology to annotate RNA Sequencing experiments.
|
[116]
|
| Ontology of Vaccine Adverse Events [47]
|
OVAE
|
An ontology for adverse events of vaccines.
|
[117]
[118]
|
| Pathogen Host Interaction Phenotype Ontology
|
PHIPO
|
An ontology of phenotypes that occur in pathogen-host interactions.
|
[119]
|
| Pathogen Transmission Ontology
|
TRANS
|
An ontology for disease transmission processes.
|
[120]
|
| Pathway ontology
|
PW
|
An ontology for annotating gene products to pathways.
|
[121]
|
| Performance Summary Display Ontology
|
PSDO
|
An ontology for concepts related to performance information for teams and organizations.
|
[122]
|
| Phenotype And Trait Ontology
|
FOBI
|
FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data.
|
[123]
|
| Planaria Ontology
|
PLANA
|
An ontology for the anatomy and developmental stages of the planaria (Schmidtea mediterranea).
|
[124]
|
| Planarian Phenotype Ontology
|
PLANP
|
An ontology for phenotypes of the planaria (Schmidtea mediterranea).
|
[125]
|
| Plant Experimental Conditions Ontology
|
PECO
|
An ontology for concepts related to plant biology experiments.
|
[126]
|
| Plant ontology
|
PO
|
An ontology and database resource that links plant traits to genomics data.
|
[127]
|
| Plant Phenology Ontology
|
PPO
|
An ontology for describing the cyclic phenomena of plants.
|
[128]
|
| Plant Trait Ontology
|
TO
|
An ontology for phenotypic traits in plants.
|
[129]
|
| Platynereis Developmental Stages
|
PDUMDV
|
An ontology for life stages of the annelid Platynereis dumerilii.
|
[130]
|
| Population and Community Ontology
|
PCO
|
An ontology for describing groups of interacting organisms.
|
[131]
|
| Porifera Ontology [48]
|
PORO
|
An ontology for the anatomy of sponges (Porifera)
|
[132]
|
| Protein modification [49]
|
MOD
|
An ontology for protein chemical modifications.
|
[133]
|
| Protein Ontology [50]
|
PRO
|
An ontological representation of protein-related entities.
|
[134]
|
| Rat Strain Ontology [51]
|
RS
|
An ontology for laboratorial rat strains.
|
[135]
|
| Relation Ontology [52]
|
RO
|
An ontology for relations between terms in the ontologies.
|
[136]
|
| Scientific Evidence and Provenance Information Ontology
|
SEPIO
|
An ontology for the provenance of scientific claims and supporting evidence.
|
[137]
|
| Sequence types and features ontology
|
SO
|
An ontology for annotation of sequences.
|
[138]
|
| Software Ontology[53]
|
SWO
|
An ontology to describe software applications with a focus on bioinformatics tools.
|
[139]
|
| Spider Ontology[54]
|
SPD
|
An ontology for anatomy and behavior of spiders as well as spider-derived products.
|
[140]
|
| Symptom Ontology
|
SYMP
|
An ontology of disease symptoms.
|
[141]
|
| Taxonomic rank vocabulary
|
TAXRANK
|
An ontology of taxonomic ranks in systematics.
|
[142]
|
| Teleost taxonomy ontology [55]
|
TTO
|
An ontology for the taxonomy of teleost fish.
|
[143]
|
| The Data Use Ontology [56]
|
DUO
|
Ontology for conditions of data use.
|
[144]
|
| The Drug Ontology [57]
|
DRON
|
An ontology for drug products.
|
[145]
|
| The Ontology of Genes and Genomes
|
OGG
|
An ontology of genes and genomes of biological organisms.
|
[146]
|
| The Oral Health and Disease Ontology [58]
|
OHD
|
An ontology for the content of teeth-related health records.
|
[147]
|
| The Prescription of Drugs Ontology [59]
|
PDRO
|
An ontology for concepts related to prescription of drugs.
|
[148]
|
| The Statistical Methods Ontology
|
STATO
|
An ontology for statistical methods, such as tests and experimental designs.
|
[149]
|
| Tick Anatomy Ontology [60]
|
TADS
|
An ontology for the anatomy of the tick families Ixodidae and Argasidae.
|
[150]
|
| Uberon multi-species anatomy ontology
|
UBERON
|
An integrative, cross species ontology for anatomical terms.
|
[151]
|
| Unified phenotype ontology (uPheno)
|
UPHENO
|
An ontology for unified phenotypical descriptictions.
|
[152]
|
| Units of measurement ontology
|
UO
|
An ontology of metrical units, couplet to the PATO ontology.
|
[153]
|
| Vaccination Informed Consent Ontology [61]
|
VICO
|
An ontology of clinical informed consents focused on vaccination procedures.
|
[154]
|
| Vaccine Ontology [62]
|
VO
|
An ontology for concepts related to vaccines and vaccination.
|
[155]
|
| Vertebrate Taxonomy Ontology
|
VTO
|
An ontology for the taxonomy of vertebrates.
|
[156]
|
| Vertebrate Trait Ontology
|
VT
|
An ontology for traits covering vertebrates
|
[157]
|
| VEuPathDB ontology
|
EUPATH
|
An ontology for the support of the Eukaryotic Pathogen, Host & Vector Genomics Resource.
|
[158]
|
| Xenopus Anatomy Ontology [63]
|
XAO
|
Ontology of the anatomy of the African clawed frog (Xenopus laevis).
|
[159]
|
| Xenopus Phenotype Ontology
|
XPO
|
An ontology for anatomical, cellular, and gene function phenotypes in African clawed frogs (Xenopus laevis).
|
[160]
|
| Zebrafish anatomy and development ontology
|
ZFA
|
Ontology for the anatomy and development of the zebrafish (Danio rerio).
|
[161]
|
| Zebrafish developmental stages ontology
|
ZFS
|
An ontology for developmental stages of the zebrafish (Danio rerio).
|
[162]
|
| Zebrafish Experimental Conditions Ontology
|
ZECO
|
An ontology for experimental conditions used in zebrafish research and described in ZFIN.
|
[163]
|
| Zebrafish Phenotype Ontology
|
ZP
|
An ontology for the phenotypes of the zebrafish (Danio rerio).
|
[164]
|