epigeneticsandchromatin.biomedcentral.com

MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones - Epigenetics & Chromatin

️Govin, Jérôme
️Tue Jan 10 2017

Histone

Protein name

Entry name for MS analysis

Gene name

UniProtKB

References

H1.1

Hist1h1a

P43275

[41, 91]

H1.2

Hist1h1c

P15864

[41, 92]

H1.3

Hist1h1d

P43277

[41]

H1.4

Hist1h1e

P43274

[41]

H1.5

Hist1h1b

P43276

[41]

H1.0 (H1°)

H1f0

P10922

[93]

TS H1.6 (H1T)

Hist1h1t

Q07133

[54]

TS H1.7 (H1T2, HANP1)

H1fnt

Q8CJI4

[55, 56]

OO H1.8 (H1oo)

OO H1.8.s1 (H1oo)

H1foo

Q8VIK3

[59]

OO H1.8.s2

H1foo

Q8VIK3-2

[60]

OO H1.8.s3 (putative spliced isoform)

H1foo

E0CZ52

OO H1.8.s4 (putative spliced isoform)

H1foo

E0CYL2

Short**

OO H1.8.s5 (putative spliced isoform)

H1foo

A0A0N4SV54

Short*

TS H1.9 (HILS1)

Hils1

Q9QYL0

[57, 58]

H1.10

H1fx

Q80ZM5

H1.11

H1.11 gene: Gm6970

Gm6970

F7DCP6

H2A

Canonical H2A

Canonical H2A genes: Hist1h2ab, Hist1h2ac, Hist1h2ad, Hist1h2ae, Hist1h2ag, Hist1h2ai, Hist1h2an, Hist1h2ao, Hist1h2ap

Hist1h2ab

P22752

[41]

Hist1h2ac

P22752

[41]

Hist1h2ad

P22752

[41]

Hist1h2ae

P22752

[41]

Hist1h2ag

P22752

[41]

Hist1h2ai

P22752

[41]

Hist1h2an

P22752

[41]

Hist1h2ao

P22752

[41]

Hist1h2ap

P22752

[41]

Canonical H2A gene: Hist1h2af

Hist1h2af

Q8CGP5

[41]

Canonical H2A gene: Hist1h2ah

Hist1h2ah

Q8CGP6

[41]

Canonical H2A gene: Hist1h2ak

Hist1h2ak

Q8CGP7

[41]

Canonical H2A gene: Hist1h2al

Hist1h2al

F8WIX8

Canonical H2A genes: Hist2h2aa1, Hist2h2aa2

Hist2h2aa1

Q6GSS7

[41]

Hist2h2aa2

Q6GSS7

[41]

Canonical H2A gene: Hist2h2ab

Hist2h2ab

Q64522

[41]

Canonical H2A gene: Hist2h2ac

Hist2h2ac

Q64523

[41]

Canonical H2A gene: Hist3h2a

Hist3h2a

Q8BFU2

[41]

H2A.J (putative variant)

H2A.J.s1 (putative variant)

H2afj

Q8R1M2

H2A.J.s2 (putative variant, putative spliced isoform)

H2afj

A0A0N4SV66

H2A.X

H2afx

P27661

[61, 62, 94]

H2A.Z.1

H2A.Z.1.s1

H2afz

P0C0S6

[43]

H2A.Z.1.s2 (putative spliced isoform)

H2afz

Q3UA95

H2A.Z.1.s3 (putative spliced isoform)

H2afz

G3UWL7

Short*

H2A.Z.1.s4 (putative spliced isoform)

H2afz

G3UX40

Short**

H2A.Z.2

H2A.Z.2.s1

H2afv

Q3THW5

[43]

H2A.Z.2.s2 (putative spliced isoform)

H2afv

Q8R029

Short*

Macro-H2A.1

Macro-H2A.1.s1

H2afy

Q9QZQ8

[95]

Macro-H2A.1.s2

H2afy

Q9QZQ8-2

[45]

Macro-H2A.2

H2afy2

Q8CCK0

[96, 97]

Macro-H2A.3

Macro-H2A.3 (pseudogene) gene: H2afy3

H2afy3

Q9D3V6

***

TS H2A.1

TS H2A.1 (TH2A)

Hist1h2aa

Q8CGP4

[41]

H2A.L.1 (H2A.Lap2)

H2A.L.1 (H2A.Lap2) genes: H2al1a, GH2al1c,H2al1d, H2al1f,H2al1g, H2al1h,H2al1i

H2al1a

Q5M8Q2

[38, 39]

H2al1c

Q5M8Q2

[38, 39]

H2al1d

Q5M8Q2

[38, 39]

H2al1f

Q5M8Q2

[38, 39]

H2al1g

Q5M8Q2

[38, 39]

H2al1h

Q5M8Q2

[38, 39]

H2al1i

Q5M8Q2

[38, 39]

H2A.L.1 gene: H2al1b

H2al1b

A0A087WP11

H2A.L.1 gene: H2al1e

H2al1e

Q810S6

H2A.L.1 gene: H2al1j

H2al1j

A2BFR3

H2A.L.1 gene: H2al1k

H2al1k

J3QP08

H2A.L.1 gene: H2al1m

H2al1m

Q9DAD9

H2A.L.1 gene: H2al1n

H2al1n

Q497L1

H2A.L.1 gene: H2al1o

H2al1o

L7MU04

H2A.L.2 (H2A.Lap3, H2A.B.1)

H2A.L.2 (H2A.Lap3, H2A.B.1) gene: H2afb1

H2afb1

Q9CQ70

[38, 39]

Y-chr H2A.L.3

Y-chr H2A.L.3 genes: H2al2b, H2al2c

H2al2b

A9Z055

[98]

H2al2c

A9Z055

[98]

H2A.P (H2A.L3, H2A.Lap4)

H2A.P (H2A.L3, H2A.Lap4) gene: Hypm

Hypm

Q9CR04

[38, 39]

H2A.B.2

H2A.B.2 gene: H2afb2

H2afb2

S4R1M3

[40, 99]

H2A.B.3

H2A.B.3 gene: H2afb3

H2afb3

S4R1G7

[40, 99]

H2A.B.3 (H2A.Lap1) gene: Gm14920

Gm14920

S4R1E0

[39, 40, 99]

H2B

Canonical H2B

Canonical H2B gene: Hist1h2bb

Hist1h2bb

Q64475

[41]

Canonical H2B genes: Hist1h2bc, Hist1h2be, Hist1h2bg

Hist1h2bc

Q6ZWY9

[41]

Hist1h2be

Q6ZWY9

[41]

Hist1h2bg

Q6ZWY9

[41]

Canonical H2B genes: Hist1h2bf, Hist1h2bj, Hist1h2bl, Hist1h2bn, Hist1h2bq, Hist1h2br

Hist1h2bf

P10853

[41]

Hist1h2bj

P10853

[41]

Hist1h2bl

P10853

[41]

Hist1h2bn

P10853

[41]

Hist1h2bq

P10853

[41]

Hist1h2br

P10853

[41]

Canonical H2B genes: Hist1h2bq, Hist1h2br (putative spliced isoform)

Hist1h2bq

Q8CBB6

Hist1h2br

Q8CBB6

Canonical H2B gene: Hist1h2bh

Hist1h2bh

Q64478

[41]

Canonical H2B gene: Hist1h2bk

Hist1h2bk

Q8CGP1

[41]

Canonical H2B gene: Hist1h2bm

Hist1h2bm

P10854

[41]

Canonical H2B gene: Hist1h2bp Spliced isoform 1 (main)

Hist1h2bp

Q8CGP2

[41]

Canonical H2B gene: hist1h2bp (putative spliced isoform)

Hist1h2bp

Q8CGP2-2

[41]

Canonical H2B gene: Hist2h2bb

Hist2h2bb

Q64525

[41]

Canonical H2B gene: Hist2h2be

Hist2h2be

Q64524

[41]

Canonical H2B gene: Hist3h2ba

Hist3h2ba

Q9D2U9

[41]

Canonical H2B gene: Hist3h2bb

Hist3h2bb

Q8CGP0

TS H2B.1 (TH2B)

Hist1h2ba

P70696

[41, 79]

subH2B (H2BL.1)

1700024p04rik

Q9D9Z7

[38, 100]

H2B.L.2

H2bfm

Q9DAB5

[38]

Canonical H3.1

Hist1h3a

P68433

[41]

Hist1h3g

P68433

[41]

Hist1h3h

P68433

[41]

Hist1h3i

P68433

[41]

Canonical H3.2

Hist1h3b

P84228

[41]

Hist1h3c

P84228

[41]

Hist1h3d

P84228

[41]

Hist1h3e

P84228

[41]

Hist1h3f

P84228

[41]

Hist2h3b

P84228

[41]

Hist2h3c1

P84228

[41]

Hist2h3c2

P84228

[41]

H3.3

H3.3 genes: H3f3a, H3f3b

H3f3a

P84244

[101, 102]

H3f3b

P84244

[101, 102]

H3.3 gene: Gm6421

Gm6421

EDL18362.1

[103]

H3.3 gene: Gm10257

Gm10257

XP_003084990.1

[103]

cenH3-CENPA

cenH3-CENPA.s1

Cenpa

O35216

[104]

cenH3-CENPA.s2 (putative spliced isoform)

Cenpa

D6RCV6

Short**

cenH3-CENPA.s3 (putative spliced isoform)

Cenpa

D6RJ71

cenH3-CENPA.s4 (putative spliced isoform)

Cenpa

A0A0G2JEV0

cenH3-CENPA.s5 (putative spliced isoform)

Cenpa

A0A0G2JGI2

cenH3-CENPA.s6 (putative spliced isoform)

Cenpa

A0A0G2JEV2

H3.5

H3f3c

P02301

***

TS H3.4 (H3T)

Gm12260

NP_001304932.1

[74]

Hist1h4a

P62806

[41, 105]

Hist1h4b

P62806

[41, 105]

Hist1h4c

P62806

[41, 105]

Hist1h4d

P62806

[41, 105]

Hist1h4f

P62806

[41, 105]

Hist1h4h

P62806

[41, 105]

Hist1h4i

P62806

[41, 105]

Hist1h4j

P62806

[41, 105]

Hist1h4k

P62806

[41, 105]

Hist1h4m

P62806

[41, 105]

Hist1h4n

P62806

[41, 105]

Hist2h4

P62806

[41, 105]

Hist4h4

P62806

[41, 105]