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US20070185061A1 - Heterocyclic boronic acid compounds - Google Patents

  • ️Thu Aug 09 2007

US20070185061A1 - Heterocyclic boronic acid compounds - Google Patents

Heterocyclic boronic acid compounds Download PDF

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Publication number
US20070185061A1
US20070185061A1 US11/556,944 US55694406A US2007185061A1 US 20070185061 A1 US20070185061 A1 US 20070185061A1 US 55694406 A US55694406 A US 55694406A US 2007185061 A1 US2007185061 A1 US 2007185061A1 Authority
US
United States
Prior art keywords
alkyl
independently
cycloalkyl
phenyl
optionally mono
Prior art date
2003-11-12
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
US11/556,944
Inventor
David Campbell
David Winn
Juan Betancort
Kevin Shreder
Yi Hu
Bei Li
Melissa Wong
Lifu Ma
William Ripka
Min Wu
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Activx Biosciences Inc
Phenomix Corp
Original Assignee
Activx Biosciences Inc
Phenomix Corp
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
2003-11-12
Filing date
2006-11-06
Publication date
2007-08-09
2006-11-06 Application filed by Activx Biosciences Inc, Phenomix Corp filed Critical Activx Biosciences Inc
2006-11-06 Priority to US11/556,944 priority Critical patent/US20070185061A1/en
2007-04-09 Assigned to PHENOMIX CORPORATION reassignment PHENOMIX CORPORATION ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: ACTIVX BIOSCIENCES, INC.
2007-04-09 Assigned to PHENOMIX CORPORATION reassignment PHENOMIX CORPORATION ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: BETANCORT, JUAN MANUEL, CAMPBELL, DAVID ALAN, WINN, DAVID T.
2007-04-09 Assigned to ACTIVX BIOSCIENCES, INC. reassignment ACTIVX BIOSCIENCES, INC. ASSIGNMENT OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: WU, MIN, MA, LIFU, RIPKA, WILLIAM, WONG, MELISSA, LI, BEI, HU, YI, SHREDER, KEVIN
2007-08-09 Publication of US20070185061A1 publication Critical patent/US20070185061A1/en
Status Abandoned legal-status Critical Current

Links

  • -1 Heterocyclic boronic acid compounds Chemical class 0.000 title claims description 87
  • 125000000753 cycloalkyl group Chemical group 0.000 claims abstract description 54
  • 125000001997 phenyl group Chemical group [H]C1=C([H])C([H])=C(*)C([H])=C1[H] 0.000 claims abstract description 40
  • 125000002887 hydroxy group Chemical group [H]O* 0.000 claims abstract description 37
  • 125000001072 heteroaryl group Chemical group 0.000 claims abstract description 33
  • 229910052736 halogen Inorganic materials 0.000 claims abstract description 22
  • 150000002367 halogens Chemical class 0.000 claims abstract description 22
  • 125000004191 (C1-C6) alkoxy group Chemical group 0.000 claims abstract description 12
  • 125000004400 (C1-C12) alkyl group Chemical group 0.000 claims abstract description 9
  • 229910052799 carbon Inorganic materials 0.000 claims abstract description 6
  • 125000001559 cyclopropyl group Chemical group [H]C1([H])C([H])([H])C1([H])* 0.000 claims abstract description 6
  • OKTJSMMVPCPJKN-UHFFFAOYSA-N Carbon Chemical compound [C] OKTJSMMVPCPJKN-UHFFFAOYSA-N 0.000 claims abstract description 5
  • IPZJQDSFZGZEOY-UHFFFAOYSA-N dimethylmethylene Chemical compound C[C]C IPZJQDSFZGZEOY-UHFFFAOYSA-N 0.000 claims abstract description 3
  • 229910052739 hydrogen Inorganic materials 0.000 claims description 41
  • 239000001257 hydrogen Substances 0.000 claims description 41
  • 125000003118 aryl group Chemical group 0.000 claims description 38
  • 125000000217 alkyl group Chemical group 0.000 claims description 31
  • UFHFLCQGNIYNRP-UHFFFAOYSA-N Hydrogen Chemical compound [H][H] UFHFLCQGNIYNRP-UHFFFAOYSA-N 0.000 claims description 28
  • 125000001797 benzyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])* 0.000 claims description 27
  • 125000003342 alkenyl group Chemical group 0.000 claims description 25
  • 125000000304 alkynyl group Chemical group 0.000 claims description 25
  • 125000004209 (C1-C8) alkyl group Chemical group 0.000 claims description 18
  • 125000000392 cycloalkenyl group Chemical group 0.000 claims description 18
  • 150000003839 salts Chemical class 0.000 claims description 17
  • 229920006395 saturated elastomer Polymers 0.000 claims description 17
  • 125000004390 alkyl sulfonyl group Chemical group 0.000 claims description 16
  • 125000003170 phenylsulfonyl group Chemical group C1(=CC=CC=C1)S(=O)(=O)* 0.000 claims description 16
  • RWRDLPDLKQPQOW-UHFFFAOYSA-N tetrahydropyrrole Natural products C1CCNC1 RWRDLPDLKQPQOW-UHFFFAOYSA-N 0.000 claims description 16
  • 125000004169 (C1-C6) alkyl group Chemical group 0.000 claims description 15
  • 125000003545 alkoxy group Chemical group 0.000 claims description 15
  • 125000003236 benzoyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C(*)=O 0.000 claims description 14
  • JUJWROOIHBZHMG-UHFFFAOYSA-N Pyridine Chemical compound C1=CC=NC=C1 JUJWROOIHBZHMG-UHFFFAOYSA-N 0.000 claims description 12
  • 125000004397 aminosulfonyl group Chemical group NS(=O)(=O)* 0.000 claims description 12
  • 125000003917 carbamoyl group Chemical group [H]N([H])C(*)=O 0.000 claims description 12
  • 125000005420 sulfonamido group Chemical group S(=O)(=O)(N*)* 0.000 claims description 12
  • 125000002023 trifluoromethyl group Chemical group FC(F)(F)* 0.000 claims description 12
  • 125000004453 alkoxycarbonyl group Chemical group 0.000 claims description 10
  • 125000004457 alkyl amino carbonyl group Chemical group 0.000 claims description 10
  • 125000003710 aryl alkyl group Chemical group 0.000 claims description 10
  • 125000001316 cycloalkyl alkyl group Chemical group 0.000 claims description 10
  • 125000002496 methyl group Chemical group [H]C([H])([H])* 0.000 claims description 10
  • 125000003282 alkyl amino group Chemical group 0.000 claims description 9
  • 125000003178 carboxy group Chemical group [H]OC(*)=O 0.000 claims description 9
  • 125000004093 cyano group Chemical group *C#N 0.000 claims description 9
  • 125000002768 hydroxyalkyl group Chemical group 0.000 claims description 9
  • 125000000876 trifluoromethoxy group Chemical group FC(F)(F)O* 0.000 claims description 9
  • 125000000738 acetamido group Chemical group [H]C([H])([H])C(=O)N([H])[*] 0.000 claims description 8
  • 125000005073 adamantyl group Chemical group C12(CC3CC(CC(C1)C3)C2)* 0.000 claims description 8
  • IOJUPLGTWVMSFF-UHFFFAOYSA-N benzothiazole Chemical compound C1=CC=C2SC=NC2=C1 IOJUPLGTWVMSFF-UHFFFAOYSA-N 0.000 claims description 8
  • 125000002527 bicyclic carbocyclic group Chemical group 0.000 claims description 8
  • 125000004663 dialkyl amino group Chemical group 0.000 claims description 8
  • 125000004029 hydroxymethyl group Chemical group [H]OC([H])([H])* 0.000 claims description 8
  • 125000000449 nitro group Chemical group [O-][N+](*)=O 0.000 claims description 8
  • 125000000008 (C1-C10) alkyl group Chemical group 0.000 claims description 7
  • 125000004916 (C1-C6) alkylcarbonyl group Chemical group 0.000 claims description 7
  • 125000002252 acyl group Chemical group 0.000 claims description 7
  • 150000002431 hydrogen Chemical class 0.000 claims description 7
  • CZPWVGJYEJSRLH-UHFFFAOYSA-N Pyrimidine Chemical compound C1=CN=CN=C1 CZPWVGJYEJSRLH-UHFFFAOYSA-N 0.000 claims description 6
  • 125000004466 alkoxycarbonylamino group Chemical group 0.000 claims description 6
  • 125000004949 alkyl amino carbonyl amino group Chemical group 0.000 claims description 6
  • 125000003806 alkyl carbonyl amino group Chemical group 0.000 claims description 6
  • 125000004414 alkyl thio group Chemical group 0.000 claims description 6
  • 125000004658 aryl carbonyl amino group Chemical group 0.000 claims description 6
  • 125000004122 cyclic group Chemical group 0.000 claims description 6
  • 125000004435 hydrogen atom Chemical group [H]* 0.000 claims description 6
  • 125000001624 naphthyl group Chemical group 0.000 claims description 6
  • UMJSCPRVCHMLSP-UHFFFAOYSA-N pyridine Natural products COC1=CC=CN=C1 UMJSCPRVCHMLSP-UHFFFAOYSA-N 0.000 claims description 6
  • OIMWEHOYHJJPJD-UHFFFAOYSA-N pyridine;pyrimidine Chemical compound C1=CC=NC=C1.C1=CN=CN=C1 OIMWEHOYHJJPJD-UHFFFAOYSA-N 0.000 claims description 6
  • 125000000472 sulfonyl group Chemical group *S(*)(=O)=O 0.000 claims description 6
  • 125000000027 (C1-C10) alkoxy group Chemical group 0.000 claims description 5
  • 235000008206 alpha-amino acids Nutrition 0.000 claims description 5
  • 125000003277 amino group Chemical group 0.000 claims description 5
  • 125000001769 aryl amino group Chemical group 0.000 claims description 5
  • 125000005620 boronic acid group Chemical group 0.000 claims description 5
  • 125000004446 heteroarylalkyl group Chemical group 0.000 claims description 5
  • 125000003392 indanyl group Chemical group C1(CCC2=CC=CC=C12)* 0.000 claims description 5
  • 229910052757 nitrogen Inorganic materials 0.000 claims description 5
  • 125000006684 polyhaloalkyl group Polymers 0.000 claims description 5
  • HBAQYPYDRFILMT-UHFFFAOYSA-N 8-[3-(1-cyclopropylpyrazol-4-yl)-1H-pyrazolo[4,3-d]pyrimidin-5-yl]-3-methyl-3,8-diazabicyclo[3.2.1]octan-2-one Chemical class C1(CC1)N1N=CC(=C1)C1=NNC2=C1N=C(N=C2)N1C2C(N(CC1CC2)C)=O HBAQYPYDRFILMT-UHFFFAOYSA-N 0.000 claims description 4
  • IJGRMHOSHXDMSA-UHFFFAOYSA-N Atomic nitrogen Chemical compound N#N IJGRMHOSHXDMSA-UHFFFAOYSA-N 0.000 claims description 4
  • 125000005089 alkenylaminocarbonyl group Chemical group 0.000 claims description 4
  • 125000004448 alkyl carbonyl group Chemical group 0.000 claims description 4
  • 125000005196 alkyl carbonyloxy group Chemical group 0.000 claims description 4
  • 125000005119 alkyl cycloalkyl group Chemical group 0.000 claims description 4
  • 125000004644 alkyl sulfinyl group Chemical group 0.000 claims description 4
  • 125000004656 alkyl sulfonylamino group Chemical group 0.000 claims description 4
  • 125000006350 alkyl thio alkyl group Chemical group 0.000 claims description 4
  • 125000005095 alkynylaminocarbonyl group Chemical group 0.000 claims description 4
  • 150000001370 alpha-amino acid derivatives Chemical class 0.000 claims description 4
  • 125000001091 aminosulfinyl group Chemical group [H]N([H])S(*)=O 0.000 claims description 4
  • 239000007864 aqueous solution Substances 0.000 claims description 4
  • 125000000051 benzyloxy group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])O* 0.000 claims description 4
  • 150000001602 bicycloalkyls Chemical group 0.000 claims description 4
  • 239000013060 biological fluid Substances 0.000 claims description 4
  • 125000004438 haloalkoxy group Chemical group 0.000 claims description 4
  • 125000000623 heterocyclic group Chemical group 0.000 claims description 4
  • 150000004677 hydrates Chemical class 0.000 claims description 4
  • 125000005350 hydroxycycloalkyl group Chemical group 0.000 claims description 4
  • 125000005476 oxopyrrolidinyl group Chemical group 0.000 claims description 4
  • 125000000951 phenoxy group Chemical group [H]C1=C([H])C([H])=C(O*)C([H])=C1[H] 0.000 claims description 4
  • 125000005592 polycycloalkyl group Polymers 0.000 claims description 4
  • 125000002924 primary amino group Chemical group [H]N([H])* 0.000 claims description 4
  • 125000004076 pyridyl group Chemical group 0.000 claims description 4
  • 239000012453 solvate Substances 0.000 claims description 4
  • 125000005034 trifluormethylthio group Chemical group FC(S*)(F)F 0.000 claims description 4
  • 125000004178 (C1-C4) alkyl group Chemical group 0.000 claims description 3
  • 125000002947 alkylene group Chemical group 0.000 claims description 3
  • 125000004429 atom Chemical group 0.000 claims description 3
  • 125000000596 cyclohexenyl group Chemical group C1(=CCCCC1)* 0.000 claims description 3
  • 125000005843 halogen group Chemical group 0.000 claims description 3
  • 125000004433 nitrogen atom Chemical group N* 0.000 claims description 3
  • 125000000229 (C1-C4)alkoxy group Chemical group 0.000 claims description 2
  • 125000006272 (C3-C7) cycloalkyl group Chemical group 0.000 claims description 2
  • WWODQSMOSOXYQQ-UHFFFAOYSA-N 1-pentylbicyclo[2.2.2]octan-4-amine Chemical compound C1CC2(N)CCC1(CCCCC)CC2 WWODQSMOSOXYQQ-UHFFFAOYSA-N 0.000 claims description 2
  • 125000000094 2-phenylethyl group Chemical group [H]C1=C([H])C([H])=C(C([H])=C1[H])C([H])([H])C([H])([H])* 0.000 claims description 2
  • 125000005330 8 membered heterocyclic group Chemical group 0.000 claims description 2
  • 125000004423 acyloxy group Chemical group 0.000 claims description 2
  • 125000005162 aryl oxy carbonyl amino group Chemical group 0.000 claims description 2
  • 125000005161 aryl oxy carbonyl group Chemical group 0.000 claims description 2
  • 125000005241 heteroarylamino group Chemical group 0.000 claims description 2
  • 125000000592 heterocycloalkyl group Chemical group 0.000 claims description 2
  • 125000003396 thiol group Chemical class [H]S* 0.000 claims 2
  • 150000001875 compounds Chemical class 0.000 abstract description 44
  • 230000002401 inhibitory effect Effects 0.000 abstract description 3
  • 102000016622 Dipeptidyl Peptidase 4 Human genes 0.000 abstract 2
  • 101000930822 Giardia intestinalis Dipeptidyl-peptidase 4 Proteins 0.000 abstract 2
  • VLKZOEOYAKHREP-UHFFFAOYSA-N n-Hexane Chemical class CCCCCC VLKZOEOYAKHREP-UHFFFAOYSA-N 0.000 description 28
  • YMWUJEATGCHHMB-UHFFFAOYSA-N Dichloromethane Chemical compound ClCCl YMWUJEATGCHHMB-UHFFFAOYSA-N 0.000 description 23
  • 239000000243 solution Substances 0.000 description 23
  • 0 CC.[3*]C([4*])(N[5*])C(C)(C)C(=O)N1CCCC1B(C)C Chemical compound CC.[3*]C([4*])(N[5*])C(C)(C)C(=O)N1CCCC1B(C)C 0.000 description 22
  • XEKOWRVHYACXOJ-UHFFFAOYSA-N Ethyl acetate Chemical compound CCOC(C)=O XEKOWRVHYACXOJ-UHFFFAOYSA-N 0.000 description 19
  • OKKJLVBELUTLKV-UHFFFAOYSA-N Methanol Chemical compound OC OKKJLVBELUTLKV-UHFFFAOYSA-N 0.000 description 18
  • 238000003786 synthesis reaction Methods 0.000 description 17
  • 230000015572 biosynthetic process Effects 0.000 description 16
  • 125000004432 carbon atom Chemical group C* 0.000 description 16
  • 238000005160 1H NMR spectroscopy Methods 0.000 description 12
  • 238000000034 method Methods 0.000 description 12
  • RTZKZFJDLAIYFH-UHFFFAOYSA-N Diethyl ether Chemical compound CCOCC RTZKZFJDLAIYFH-UHFFFAOYSA-N 0.000 description 11
  • 239000007787 solid Substances 0.000 description 11
  • 238000006243 chemical reaction Methods 0.000 description 10
  • 239000000203 mixture Substances 0.000 description 10
  • VEXZGXHMUGYJMC-UHFFFAOYSA-N Hydrochloric acid Chemical compound Cl VEXZGXHMUGYJMC-UHFFFAOYSA-N 0.000 description 9
  • VYPSYNLAJGMNEJ-UHFFFAOYSA-N Silicium dioxide Chemical compound O=[Si]=O VYPSYNLAJGMNEJ-UHFFFAOYSA-N 0.000 description 9
  • 235000019439 ethyl acetate Nutrition 0.000 description 9
  • XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 8
  • 108010067722 Dipeptidyl Peptidase 4 Proteins 0.000 description 7
  • 102100025012 Dipeptidyl peptidase 4 Human genes 0.000 description 7
  • 125000000999 tert-butyl group Chemical group [H]C([H])([H])C(*)(C([H])([H])[H])C([H])([H])[H] 0.000 description 7
  • 239000002253 acid Substances 0.000 description 6
  • 150000002148 esters Chemical class 0.000 description 6
  • 125000001495 ethyl group Chemical group [H]C([H])([H])C([H])([H])* 0.000 description 6
  • 125000000959 isobutyl group Chemical group [H]C([H])([H])C([H])(C([H])([H])[H])C([H])([H])* 0.000 description 6
  • 125000001449 isopropyl group Chemical group [H]C([H])([H])C([H])(*)C([H])([H])[H] 0.000 description 6
  • 125000004108 n-butyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])C([H])([H])* 0.000 description 6
  • 239000002904 solvent Substances 0.000 description 6
  • 239000007858 starting material Substances 0.000 description 6
  • 238000003756 stirring Methods 0.000 description 6
  • KFZMGEQAYNKOFK-UHFFFAOYSA-N Isopropanol Chemical compound CC(C)O KFZMGEQAYNKOFK-UHFFFAOYSA-N 0.000 description 5
  • QNAYBMKLOCPYGJ-REOHCLBHSA-N L-alanine Chemical compound C[C@H](N)C(O)=O QNAYBMKLOCPYGJ-REOHCLBHSA-N 0.000 description 5
  • SJRJJKPEHAURKC-UHFFFAOYSA-N N-Methylmorpholine Chemical compound CN1CCOCC1 SJRJJKPEHAURKC-UHFFFAOYSA-N 0.000 description 5
  • 235000004279 alanine Nutrition 0.000 description 5
  • ZADPBFCGQRWHPN-UHFFFAOYSA-N boronic acid Chemical compound OBO ZADPBFCGQRWHPN-UHFFFAOYSA-N 0.000 description 5
  • 239000000460 chlorine Substances 0.000 description 5
  • 239000003921 oil Substances 0.000 description 5
  • 239000000741 silica gel Substances 0.000 description 5
  • 229910002027 silica gel Inorganic materials 0.000 description 5
  • MOILFCKRQFQVFS-OORONAJNSA-N (1s,3r,4s,5s)-4,6,6-trimethylbicyclo[3.1.1]heptane-3,4-diol Chemical compound C1[C@H]2C(C)(C)[C@@H]1C[C@@H](O)[C@]2(O)C MOILFCKRQFQVFS-OORONAJNSA-N 0.000 description 4
  • LMDZBCPBFSXMTL-UHFFFAOYSA-N 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide Chemical compound CCN=C=NCCCN(C)C LMDZBCPBFSXMTL-UHFFFAOYSA-N 0.000 description 4
  • 108090000194 Dipeptidyl-peptidases and tripeptidyl-peptidases Proteins 0.000 description 4
  • 102000003779 Dipeptidyl-peptidases and tripeptidyl-peptidases Human genes 0.000 description 4
  • LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 description 4
  • NQRYJNQNLNOLGT-UHFFFAOYSA-N Piperidine Chemical compound C1CCNCC1 NQRYJNQNLNOLGT-UHFFFAOYSA-N 0.000 description 4
  • HEDRZPFGACZZDS-MICDWDOJSA-N Trichloro(2H)methane Chemical compound [2H]C(Cl)(Cl)Cl HEDRZPFGACZZDS-MICDWDOJSA-N 0.000 description 4
  • 125000002915 carbonyl group Chemical group [*:2]C([*:1])=O 0.000 description 4
  • 229910052801 chlorine Inorganic materials 0.000 description 4
  • 238000004440 column chromatography Methods 0.000 description 4
  • 238000005859 coupling reaction Methods 0.000 description 4
  • 238000010511 deprotection reaction Methods 0.000 description 4
  • ZUOUZKKEUPVFJK-UHFFFAOYSA-N diphenyl Chemical compound C1=CC=CC=C1C1=CC=CC=C1 ZUOUZKKEUPVFJK-UHFFFAOYSA-N 0.000 description 4
  • 239000003112 inhibitor Substances 0.000 description 4
  • 239000010410 layer Substances 0.000 description 4
  • 230000004048 modification Effects 0.000 description 4
  • 238000012986 modification Methods 0.000 description 4
  • 125000004123 n-propyl group Chemical group [H]C([H])([H])C([H])([H])C([H])([H])* 0.000 description 4
  • 125000001971 neopentyl group Chemical group [H]C([*])([H])C(C([H])([H])[H])(C([H])([H])[H])C([H])([H])[H] 0.000 description 4
  • HXITXNWTGFUOAU-UHFFFAOYSA-N phenylboronic acid Chemical compound OB(O)C1=CC=CC=C1 HXITXNWTGFUOAU-UHFFFAOYSA-N 0.000 description 4
  • 239000002244 precipitate Substances 0.000 description 4
  • 125000006239 protecting group Chemical group 0.000 description 4
  • 238000000746 purification Methods 0.000 description 4
  • 125000002914 sec-butyl group Chemical group [H]C([H])([H])C([H])([H])C([H])(*)C([H])([H])[H] 0.000 description 4
  • MOILFCKRQFQVFS-BDNRQGISSA-N (1r,3s,4r,5r)-4,6,6-trimethylbicyclo[3.1.1]heptane-3,4-diol Chemical compound C1[C@@H]2C(C)(C)[C@H]1C[C@H](O)[C@@]2(O)C MOILFCKRQFQVFS-BDNRQGISSA-N 0.000 description 3
  • QTBSBXVTEAMEQO-UHFFFAOYSA-N Acetic acid Chemical compound CC(O)=O QTBSBXVTEAMEQO-UHFFFAOYSA-N 0.000 description 3
  • WKBOTKDWSSQWDR-UHFFFAOYSA-N Bromine atom Chemical compound [Br] WKBOTKDWSSQWDR-UHFFFAOYSA-N 0.000 description 3
  • LRHPLDYGYMQRHN-UHFFFAOYSA-N N-Butanol Chemical compound CCCCO LRHPLDYGYMQRHN-UHFFFAOYSA-N 0.000 description 3
  • MUBZPKHOEPUJKR-UHFFFAOYSA-N Oxalic acid Chemical compound OC(=O)C(O)=O MUBZPKHOEPUJKR-UHFFFAOYSA-N 0.000 description 3
  • HEMHJVSKTPXQMS-UHFFFAOYSA-M Sodium hydroxide Chemical compound [OH-].[Na+] HEMHJVSKTPXQMS-UHFFFAOYSA-M 0.000 description 3
  • 125000001584 benzyloxycarbonyl group Chemical group C(=O)(OCC1=CC=CC=C1)* 0.000 description 3
  • GDTBXPJZTBHREO-UHFFFAOYSA-N bromine Substances BrBr GDTBXPJZTBHREO-UHFFFAOYSA-N 0.000 description 3
  • 229910052794 bromium Inorganic materials 0.000 description 3
  • KRKNYBCHXYNGOX-UHFFFAOYSA-N citric acid Chemical compound OC(=O)CC(O)(C(O)=O)CC(O)=O KRKNYBCHXYNGOX-UHFFFAOYSA-N 0.000 description 3
  • 230000008878 coupling Effects 0.000 description 3
  • 238000010168 coupling process Methods 0.000 description 3
  • 125000001995 cyclobutyl group Chemical group [H]C1([H])C([H])([H])C([H])(*)C1([H])[H] 0.000 description 3
  • 125000000113 cyclohexyl group Chemical group [H]C1([H])C([H])([H])C([H])([H])C([H])(*)C([H])([H])C1([H])[H] 0.000 description 3
  • NISGSNTVMOOSJQ-UHFFFAOYSA-N cyclopentanamine Chemical compound NC1CCCC1 NISGSNTVMOOSJQ-UHFFFAOYSA-N 0.000 description 3
  • 125000001511 cyclopentyl group Chemical group [H]C1([H])C([H])([H])C([H])([H])C([H])(*)C1([H])[H] 0.000 description 3
  • 201000010099 disease Diseases 0.000 description 3
  • 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 description 3
  • 150000002430 hydrocarbons Chemical group 0.000 description 3
  • WGOPGODQLGJZGL-UHFFFAOYSA-N lithium;butane Chemical compound [Li+].CC[CH-]C WGOPGODQLGJZGL-UHFFFAOYSA-N 0.000 description 3
  • 150000007524 organic acids Chemical class 0.000 description 3
  • 125000001424 substituent group Chemical group 0.000 description 3
  • WRECIMRULFAWHA-UHFFFAOYSA-N trimethyl borate Chemical compound COB(OC)OC WRECIMRULFAWHA-UHFFFAOYSA-N 0.000 description 3
  • GHYOCDFICYLMRF-UTIIJYGPSA-N (2S,3R)-N-[(2S)-3-(cyclopenten-1-yl)-1-[(2R)-2-methyloxiran-2-yl]-1-oxopropan-2-yl]-3-hydroxy-3-(4-methoxyphenyl)-2-[[(2S)-2-[(2-morpholin-4-ylacetyl)amino]propanoyl]amino]propanamide Chemical compound C1(=CCCC1)C[C@@H](C(=O)[C@@]1(OC1)C)NC([C@H]([C@@H](C1=CC=C(C=C1)OC)O)NC([C@H](C)NC(CN1CCOCC1)=O)=O)=O GHYOCDFICYLMRF-UTIIJYGPSA-N 0.000 description 2
  • 125000003088 (fluoren-9-ylmethoxy)carbonyl group Chemical group 0.000 description 2
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  • 230000002496 gastric effect Effects 0.000 description 1
  • 230000004153 glucose metabolism Effects 0.000 description 1
  • 235000013922 glutamic acid Nutrition 0.000 description 1
  • 239000004220 glutamic acid Substances 0.000 description 1
  • ZDXPYRJPNDTMRX-UHFFFAOYSA-N glutamine Natural products OC(=O)C(N)CCC(N)=O ZDXPYRJPNDTMRX-UHFFFAOYSA-N 0.000 description 1
  • 235000004554 glutamine Nutrition 0.000 description 1
  • HNDVDQJCIGZPNO-UHFFFAOYSA-N histidine Natural products OC(=O)C(N)CC1=CN=CN1 HNDVDQJCIGZPNO-UHFFFAOYSA-N 0.000 description 1
  • 235000014304 histidine Nutrition 0.000 description 1
  • 238000001727 in vivo Methods 0.000 description 1
  • 125000003454 indenyl group Chemical group C1(C=CC2=CC=CC=C12)* 0.000 description 1
  • 229910052500 inorganic mineral Chemical class 0.000 description 1
  • 230000003914 insulin secretion Effects 0.000 description 1
  • 230000002473 insulinotropic effect Effects 0.000 description 1
  • PNDPGZBMCMUPRI-UHFFFAOYSA-N iodine Chemical compound II PNDPGZBMCMUPRI-UHFFFAOYSA-N 0.000 description 1
  • 125000002346 iodo group Chemical group I* 0.000 description 1
  • 238000002955 isolation Methods 0.000 description 1
  • AGPKZVBTJJNPAG-UHFFFAOYSA-N isoleucine Natural products CCC(C)C(N)C(O)=O AGPKZVBTJJNPAG-UHFFFAOYSA-N 0.000 description 1
  • 229960000310 isoleucine Drugs 0.000 description 1
  • 125000000555 isopropenyl group Chemical group [H]\C([H])=C(\*)C([H])([H])[H] 0.000 description 1
  • 125000005928 isopropyloxycarbonyl group Chemical group [H]C([H])([H])C([H])(OC(*)=O)C([H])([H])[H] 0.000 description 1
  • 150000002576 ketones Chemical class 0.000 description 1
  • 239000004310 lactic acid Substances 0.000 description 1
  • 235000014655 lactic acid Nutrition 0.000 description 1
  • 229960003136 leucine Drugs 0.000 description 1
  • 230000000670 limiting effect Effects 0.000 description 1
  • 239000007788 liquid Substances 0.000 description 1
  • 229910052943 magnesium sulfate Inorganic materials 0.000 description 1
  • 239000001630 malic acid Substances 0.000 description 1
  • 235000011090 malic acid Nutrition 0.000 description 1
  • 238000004519 manufacturing process Methods 0.000 description 1
  • 238000004949 mass spectrometry Methods 0.000 description 1
  • QARBMVPHQWIHKH-UHFFFAOYSA-N methanesulfonyl chloride Chemical compound CS(Cl)(=O)=O QARBMVPHQWIHKH-UHFFFAOYSA-N 0.000 description 1
  • 229930182817 methionine Natural products 0.000 description 1
  • 125000001160 methoxycarbonyl group Chemical group [H]C([H])([H])OC(*)=O 0.000 description 1
  • 150000004702 methyl esters Chemical class 0.000 description 1
  • 239000011707 mineral Chemical class 0.000 description 1
  • 150000007522 mineralic acids Chemical class 0.000 description 1
  • 125000002950 monocyclic group Chemical group 0.000 description 1
  • 239000012452 mother liquor Substances 0.000 description 1
  • 125000004370 n-butenyl group Chemical group [H]\C([H])=C(/[H])C([H])([H])C([H])([H])* 0.000 description 1
  • 239000012299 nitrogen atmosphere Substances 0.000 description 1
  • 239000012044 organic layer Substances 0.000 description 1
  • 239000012074 organic phase Substances 0.000 description 1
  • 125000001181 organosilyl group Chemical group [SiH3]* 0.000 description 1
  • 235000006408 oxalic acid Nutrition 0.000 description 1
  • 125000003232 p-nitrobenzoyl group Chemical group [N+](=O)([O-])C1=CC=C(C(=O)*)C=C1 0.000 description 1
  • FJKROLUGYXJWQN-UHFFFAOYSA-N papa-hydroxy-benzoic acid Natural products OC(=O)C1=CC=C(O)C=C1 FJKROLUGYXJWQN-UHFFFAOYSA-N 0.000 description 1
  • 230000000144 pharmacologic effect Effects 0.000 description 1
  • 125000006678 phenoxycarbonyl group Chemical group 0.000 description 1
  • ACVYVLVWPXVTIT-UHFFFAOYSA-M phosphinate Chemical compound [O-][PH2]=O ACVYVLVWPXVTIT-UHFFFAOYSA-M 0.000 description 1
  • 235000011007 phosphoric acid Nutrition 0.000 description 1
  • 150000003016 phosphoric acids Chemical class 0.000 description 1
  • 125000001557 phthalyl group Chemical group C(=O)(O)C1=C(C(=O)*)C=CC=C1 0.000 description 1
  • 230000036470 plasma concentration Effects 0.000 description 1
  • 125000003367 polycyclic group Chemical group 0.000 description 1
  • 229920000166 polytrimethylene carbonate Polymers 0.000 description 1
  • 229910000027 potassium carbonate Inorganic materials 0.000 description 1
  • 238000002360 preparation method Methods 0.000 description 1
  • GCYXWQUSHADNBF-AAEALURTSA-N preproglucagon 78-108 Chemical compound C([C@@H](C(=O)N[C@@H]([C@@H](C)CC)C(=O)N[C@@H](C)C(=O)N[C@@H](CC=1C2=CC=CC=C2NC=1)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CCCCN)C(=O)NCC(=O)N[C@@H](CCCNC(N)=N)C(=O)NCC(O)=O)NC(=O)[C@H](CCC(O)=O)NC(=O)[C@H](CCCCN)NC(=O)[C@H](C)NC(=O)[C@H](C)NC(=O)[C@H](CCC(N)=O)NC(=O)CNC(=O)[C@H](CCC(O)=O)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC=1C=CC(O)=CC=1)NC(=O)[C@H](CO)NC(=O)[C@H](CO)NC(=O)[C@@H](NC(=O)[C@H](CC(O)=O)NC(=O)[C@H](CO)NC(=O)[C@@H](NC(=O)[C@H](CC=1C=CC=CC=1)NC(=O)[C@@H](NC(=O)CNC(=O)[C@H](CCC(O)=O)NC(=O)[C@H](C)NC(=O)[C@@H](N)CC=1N=CNC=1)[C@@H](C)O)[C@@H](C)O)C(C)C)C1=CC=CC=C1 GCYXWQUSHADNBF-AAEALURTSA-N 0.000 description 1
  • 239000000047 product Substances 0.000 description 1
  • 235000019260 propionic acid Nutrition 0.000 description 1
  • 125000001501 propionyl group Chemical group O=C([*])C([H])([H])C([H])([H])[H] 0.000 description 1
  • 235000018102 proteins Nutrition 0.000 description 1
  • 102000004169 proteins and genes Human genes 0.000 description 1
  • 108090000623 proteins and genes Proteins 0.000 description 1
  • 229940107700 pyruvic acid Drugs 0.000 description 1
  • IUVKMZGDUIUOCP-BTNSXGMBSA-N quinbolone Chemical compound O([C@H]1CC[C@H]2[C@H]3[C@@H]([C@]4(C=CC(=O)C=C4CC3)C)CC[C@@]21C)C1=CCCC1 IUVKMZGDUIUOCP-BTNSXGMBSA-N 0.000 description 1
  • 230000001105 regulatory effect Effects 0.000 description 1
  • 229960004889 salicylic acid Drugs 0.000 description 1
  • 235000004400 serine Nutrition 0.000 description 1
  • 239000000377 silicon dioxide Substances 0.000 description 1
  • 125000003808 silyl group Chemical group [H][Si]([H])([H])[*] 0.000 description 1
  • 229910000030 sodium bicarbonate Inorganic materials 0.000 description 1
  • 229910000029 sodium carbonate Inorganic materials 0.000 description 1
  • HPALAKNZSZLMCH-UHFFFAOYSA-M sodium;chloride;hydrate Chemical compound O.[Na+].[Cl-] HPALAKNZSZLMCH-UHFFFAOYSA-M 0.000 description 1
  • 239000000126 substance Substances 0.000 description 1
  • 239000000758 substrate Substances 0.000 description 1
  • 125000004434 sulfur atom Chemical group 0.000 description 1
  • 235000011149 sulphuric acid Nutrition 0.000 description 1
  • 239000000725 suspension Substances 0.000 description 1
  • 239000012622 synthetic inhibitor Substances 0.000 description 1
  • 239000003826 tablet Substances 0.000 description 1
  • 239000011975 tartaric acid Substances 0.000 description 1
  • 235000002906 tartaric acid Nutrition 0.000 description 1
  • LMBFAGIMSUYTBN-MPZNNTNKSA-N teixobactin Chemical compound C([C@H](C(=O)N[C@@H]([C@@H](C)CC)C(=O)N[C@@H](CO)C(=O)N[C@H](CCC(N)=O)C(=O)N[C@H]([C@@H](C)CC)C(=O)N[C@@H]([C@@H](C)CC)C(=O)N[C@@H](CO)C(=O)N[C@H]1C(N[C@@H](C)C(=O)N[C@@H](C[C@@H]2NC(=N)NC2)C(=O)N[C@H](C(=O)O[C@H]1C)[C@@H](C)CC)=O)NC)C1=CC=CC=C1 LMBFAGIMSUYTBN-MPZNNTNKSA-N 0.000 description 1
  • LPQZERIRKRYGGM-UHFFFAOYSA-N tert-butyl pyrrolidine-1-carboxylate Chemical compound CC(C)(C)OC(=O)N1CCCC1 LPQZERIRKRYGGM-UHFFFAOYSA-N 0.000 description 1
  • 238000002560 therapeutic procedure Methods 0.000 description 1
  • 125000004001 thioalkyl group Chemical group 0.000 description 1
  • 235000008521 threonine Nutrition 0.000 description 1
  • 230000000699 topical effect Effects 0.000 description 1
  • VZCYOOQTPOCHFL-UHFFFAOYSA-N trans-butenedioic acid Natural products OC(=O)C=CC(O)=O VZCYOOQTPOCHFL-UHFFFAOYSA-N 0.000 description 1
  • 125000000165 tricyclic carbocycle group Chemical group 0.000 description 1
  • 125000004044 trifluoroacetyl group Chemical group FC(C(=O)*)(F)F 0.000 description 1
  • 125000000026 trimethylsilyl group Chemical group [H]C([H])([H])[Si]([*])(C([H])([H])[H])C([H])([H])[H] 0.000 description 1
  • 125000002221 trityl group Chemical group [H]C1=C([H])C([H])=C([H])C([H])=C1C([*])(C1=C(C(=C(C(=C1[H])[H])[H])[H])[H])C1=C([H])C([H])=C([H])C([H])=C1[H] 0.000 description 1
  • OUYCCCASQSFEME-UHFFFAOYSA-N tyrosine Natural products OC(=O)C(N)CC1=CC=C(O)C=C1 OUYCCCASQSFEME-UHFFFAOYSA-N 0.000 description 1
  • 239000004474 valine Substances 0.000 description 1
  • 229960004295 valine Drugs 0.000 description 1
  • 125000000391 vinyl group Chemical group [H]C([*])=C([H])[H] 0.000 description 1
  • 229920002554 vinyl polymer Polymers 0.000 description 1

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    • C07F5/00Compounds containing elements of Groups 3 or 13 of the Periodic Table

Definitions

  • the present invention relates to boronic acid compounds and their use as inhibitors of post-proline/alanine cleaving amino-dipeptidases.
  • the invention also relates to methods of employing such inhibitors to treat DPP-related diseases.
  • the invention has applications in the medicinal chemical, pharmacological, and medical arts.
  • DPP Dipeptidyl peptidases
  • IGF impaired fasting glucose
  • DPP-IV has been implicated in the control of glucose metabolism because its substrates include the insulinotropic hormones, glucagon like peptide-1 (GLP-1) and gastric inhibitory peptide (GIP), which are inactivated by removal of their two N-terminal amino acids.
  • GLP-1 glucagon like peptide-1
  • GIP gastric inhibitory peptide
  • the present invention provides DPP inhibitors that are effective in treating conditions that may be regulated or normalized by inhibition of DPPs. More particularly, the invention relates to boronic acid-containing heterocycles and their derivatives that inhibit DPP-IV.
  • the present invention provides compounds of formula I: including all enantiomers, diastereoisomers, solvates, hydrates and pharmaceutically acceptable salts thereof, wherein:
  • n 1 to 3;
  • X is CH 2 ; S; O; CF 2 or C(CH 3 ) 2 ;
  • Z is H; halogen; hydroxyl; (C 1-6 )alkoxy; (C 1-12 )alkyl; (C 3-12 )cycloalkyl; phenyl; or heteroaryl; where the phenyl and heteroaryl groups are optionally mono- or independently plurisubstituted with R 7 ;
  • R 7 is halogen; (C 1-10 )alkyl; (C 1-10 )alkoxy; (C 1-10 )alkylamino; (C 1-10 ) dialkylamino; benzyl; benzyloxy; hydroxyl(C 1-6 )alkyl; hydroxymethyl; nitro; trifluoromethyl; trifluoromethoxy; trifluoromethylthio; N-hydroxyamino; cyano; carboxy; acetamido; hydroxy; sulfamoyl; sulfonamido; or carbamoyl;
  • one of the bonds in the ring containing X is a double bond
  • R 1 and R 2 independently or together are hydrogen; a boronic acid protecting group; or a group capable of being hydrolyzed to a hydroxyl group in an aqueous solution at physiological pH or in biological fluids; and
  • CR i R ii may be present or absent
  • R 3 , R 4 and R 5 are selected from (cc), (dd) or (ee):
  • Compounds of formula I also include those wherein X is CH 2 ; the ring containing X is saturated; CR i R ii is absent, R 1 , R 2 are hydrogen; and R 3 , R 4 and R 5 have the subgeneric designations given by foregoing cause (cc)b).
  • R 5 is a (C 1-12 )alkyl or (C 3-12 )cycloalkyl, including, but not limited to, methyl, ethyl, n-propyl, isopropyl, n-butyl, isobutyl, sec-butyl, tert-butyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cyclohexylmethyl, 1-cyclohexylethyl, or adamantyl.
  • X is CH 2 ; the ring containing X is saturated; CR i R ii is absent, R 1 , R 2 are hydrogen; and R 3 , R 4 and R 5 have the subgeneric designation given by foregoing clause (cc)d).
  • X is CH 2 ; the ring containing X is saturated; CR i R ii is absent, R 1 , R 2 are hydrogen; and R 3 , R 4 and R 5 have the subgeneric designation given by foregoing clause (cc)e).
  • X is CH 2 ; the ring containing X is saturated; CR i R ii is absent; R 1 , R 2 , are hydrogen; and R 3 , R 4 and R 5 have the subgeneric designation given by foregoing clause (cc)f).
  • X is CH 2 ; the ring containing X is saturated; CR i R ii is absent, R 1 , R 2 are hydrogen; R 3 , R 4 and R 5 have the subgeneric designation given by foregoing clause (cc)g.
  • Compounds of formula I include those wherein X is CH 2 ; the ring containing X is saturated; CR i R ii is absent, R 1 , R 2 are hydrogen; R 3 , R 4 and R 5 have the subgeneric designation given by foregoing clause (cc)h.
  • X is CH 2 ; the ring containing X is saturated; CR i R ii is absent, R 1 , R 2 are hydrogen; R 3 , R 4 and R 5 have the subgeneric designation given by foregoing clause (cc)j.
  • X is CH 2 ; the ring containing X is saturated; CR i R ii is absent, R 1 , R 2 are hydrogen; R 3 , R 4 and R 5 have the subgeneric designation given by foregoing clause (cc)k.
  • a preferred subgeneric formulation of the invention when CR i R ii of Formula I is absent includes compounds of Formula II having the following linear alkyl pyrrolidine formula:
  • R 3 , R 4 and R 5 are defined as given for groups (cc), (dd) and (ee) as given above for Formula I, and R 1 and R 2 independently or together are —OH, —O ⁇ M + wherein M + is a cation, a hydroxyl bearing a boronic acid protecting group, or a group capable of being hydrolyzed to a hydroxyl group in an aqueous solution at physiological pH or in biological fluids.
  • R 5 may be alkyl, cycloalkyl, optionally mono- or independently plurisubstituted as described above.
  • R 3 and R 4 are both hydrogen.
  • n 1
  • R 5 is a group of the formula: where R 21 is hydrogen; (C 1-8 )alkyl; benzyl; or phenyl; in which the benzyl and phenyl groups are optionally mono- or independently di-substituted on the ring with R 2 ; each t is independently 0 to 6; and u is 0 to 3.
  • R 5 has formula:
  • Another preferred subgeneric formulation of Formula I when CR i R ii is present includes compounds of formula III:
  • R 1 and R 2 independently or together are —OH, —O ⁇ M + wherein M + is a cation, a hydroxyl bearing a boronic acid protecting group, or a group capable of being hydrolyzed to a hydroxyl group in an aqueous solution at physiological pH or in biological fluids; and, R 3 , R 4 , R 5 , R i and R ii are the same as are designated for groups (aa) and (bb) of foregoing Formula I.
  • the invention also relates to methods for preparing the above-described compounds.
  • the compounds of formula II and III are prepared by reacting a cyclic amine (e.g., pyrrolidine or piperidine), suitably protected with a standard protecting group such as Boc-, Fmoc-, CBz- or the like, with sec-BuLi/TMEDA followed by B(OCH 3 ) 3 , to provide the methyl boronic ester derivative.
  • Acid hydrolysis of the methyl esters with 2N HCl provides the boronic acid intermediate 1.
  • Reaction of 1 with (+) pinanediol, deprotection of the amino protecting group, and recrystallization provides the pinanediol ester 2 as an isomerically pure salt.
  • Intermediate 2 is useful for the synthesis of both series A and series B compounds.
  • N-acylation of 2 with chloroacetyl chloride provides the ⁇ -chloro amide 3.
  • Treatment of 3 with Na 2 CO 3 and cyclopentylamine, and hydrolysis of the pinanediol boronic ester provides a compound of formula I, 4.
  • coupling of intermediate 2 with N-Boc-5-phenyl-Pro using EDAC/HOBT provides amide 5.
  • Deprotection of the amino group and hydrolysis of the boronic esters provides a compound of formula II, 6.
  • This synthetic scheme is adaptable for the preparation of all the compounds of the invention, by reacting the appropriate cyclic amine (pyrrollidine, piperidine, and other cyclic amines) with sec-BuLi/B(OCH 3 ) 3 , and coupling the boronic ester intermediate with the desired acid chloride or acid via routes A or B, respectively.
  • the appropriate cyclic amine may either be commercially available or is easily synthesized through known procedures, for example, those procedures disclosed in U.S. Pat. Nos.
  • Another aspect of the invention provides a process for preparing the compounds of formula I:
  • R 1 , R 2 , R 3 , R 4 , R i , R ii , n, X, and Z are as defined herein. Preferred embodiments are those where R 3 and R 4 are hydrogen, L is halogen, including but not limited to Cl, and R 5 —NH 2 is cyclopentylamine.
  • the compounds of the invention may be prepared in the form of pharmaceutically acceptable salts, especially acid-addition salts, including salts of organic acids and mineral acids.
  • salts include salts of organic acids such as formic acid, fumaric acid, acetic acid, propionic acid, glycolic acid, lactic acid, pyruvic acid, oxalic acid, succinic acid, malic acid, tartaric acid, citric acid, benzoic acid, salicylic acid and the like.
  • Suitable inorganic acid-addition salts include salts of hydrochloric, hydrobromic, sulphuric and phosphoric acids and the like.
  • Further examples of pharmaceutically acceptable inorganic or organic acid addition salts include the pharmaceutically acceptable salts listed in Journal of Pharmaceutical Science, 66, 2 (1977) which are known to the skilled artisan.
  • the acid addition salts may be obtained as the direct products of compound synthesis.
  • the free base may be dissolved in a suitable solvent containing the appropriate acid, and the salt isolated by evaporating the solvent or otherwise separating the salt and solvent.
  • the compounds of this invention may form solvates with standard low molecular weight solvents, including water to yield hydrates, using methods known to the skilled artisan.
  • compositions containing a compound of the invention of the invention may be prepared by conventional techniques, e.g. as described in Remington: The Science and Practise of Pharmacy, 19th Ed., 1995.
  • the compositions may appear in conventional forms, for example capsules, tablets, aerosols, solutions, suspensions or topical applications.
  • the compounds of the invention are effective for DPP-IV inhibition over a wide dosage range.
  • dosages from about 0.05 to about 1000 mg, preferably from about 1 to about 500 mg, per day may be used.
  • a typical dosage is about 10 mg to about 500 mg per day.
  • the exact dosage will depend upon the mode of administration, on the therapy desired, form in which administered, the subject to be treated and the body weight of the subject to be treated, and the preference and experience of the physician or veterinarian in charge.
  • the compounds of the invention are dispensed in unit dosage form comprising from about 0.05 to about 1000 mg of active ingredient together with a pharmaceutically acceptable carrier per unit dosage.
  • substantially pure in relation to compounds of the invention such as, but not limited to, those of formula VA and VB, it is meant that one isomer or the other, including all enantiomers, diastereoisomers, solvates, hydrates, and pharmaceutically acceptable salts thereof, represents at least 90% by weight of the composition. In some embodiments one isomer represents at least 98% by weight of the composition.
  • boronic acid protecting group refers to a moiety employed to block or protect the boronic acid functionality while reactions involving other functional sites of the compound are carried out.
  • the boronic acid OH groups are protected as boronic acid esters derived from alchohols such as (+)-pinanediol; pinacol; 1,2-dicyclohexyl-ethanediol; 1,2-ethanediol; 2,2-diethanolamine; 1,3-propanediol; 2,3-butanediol, diisopropyl tartrate; 1,4-butanediol; diisopropylethanediol; (S,S,)-5,6-decanediol; 1,1,2-triphenyl-1,2-ethanediol; (2R,3R)-1,4-dimethyoxy-1,1,4,4-tetraphenyl-2,3-butanediol;
  • alcohols having only a single hydroxy group such as methanol, form diesters having the structure —B(OR) 2 in which R is the organic moiety from the alcohol (e.g., —B(OMe) 2 ).
  • diols such as pinacol form cyclic boronic diesters with —B(OH) 2 in which the organic moiety (e.g., —C(Me) 2 —C(Me) 2 —)is attached to both oxygens.
  • N-protecting group or “N-protected” as used herein refers to those groups intended to protect the N-terminus of an amino acid or peptide or to protect an amino group against undesirable reactions during synthetic procedures. Commonly used N-protecting groups are disclosed in T. W. Greene, P. G. Wuts, “Protective Groups In Organic Synthesis, 3 rd Ed.” (John Wiley & Sons, New York (1999)), which is hereby incorporated by reference.
  • N-protecting groups comprise acyl groups such as formyl, acetyl, propionyl, pivaloyl, t-butylacetyl, 2-chloroacetyl, 2-bromoacetyl, trifluoroacetyl, trichloroacetyl, phthalyl, o-nitrophenoxyacetyl, ⁇ -chlorobutyryl, benzoyl, 4-chlorobenzoyl, 4-bromobenzoyl, 4-nitrobenzoyl, and the like; sulfonyl groups such as benzenesulfonyl, p-toluenesulfonyl and the like; carbamate forming groups such as benzyloxycarbonyl, p-chlorobenzyloxycarbonyl, p-methoxybenzyloxycarbonyl, p-nitrobenzyloxycarbonyl, 2-nitrobenzyloxycarbonyl, p-bromobenzy
  • N-protecting groups are formyl, acetyl, benzoyl, pivaloyl, t-butylacetyl, phenylsulfonyl, benzyl, 9-fluorenylmethyloxycarbonyl (Fmoc), t-butyloxycarbonyl (Boc) and benzyloxycarbonyl (Cbz).
  • alkyl or “(C 1-12 )alkyl”, alone or in combination, refers to linear or branched chains and may include cyclic portions, having from 1-12 (the use of 1-12 herein implies each of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 and 12) carbon atoms, such as but not limited to, e.g. methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, tert-butyl, n-pentyl, 2-methylbutyl, 3-methylbutyl, n-hexyl, 4-methylpentyl, neopentyl, 2,2-dimethylpropyl, and the like.
  • (C 1-10 )alkyl refers to linear or branched chains and may include cyclic portions, having from 1-10, 1-8, or 1-6 carbon atoms, respectively, such as but not limited to, e.g.
  • (C 1-4 )alkyl refers to linear or branched chains and may include cyclic portions, having from 1-4 carbon atoms, such as but not limited to, e.g. methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, tert-butyl, and the like.
  • (C 2-12 )alkenyl and “(C 2-10 )alkenyl”, alone or in combination, refers to a straight or branched, unsaturated hydrocarbon chain having from 2-12 or 2-10 carbon atoms, respectively, and at least one double bond, such as, but not limited to, vinyl, 1-propenyl, allyl, isopropenyl, n-butenyl, n-pentenyl, n-hexenyl, and the like.
  • (C 3-12 )cycloalkyl and “(C 3-10 )cycloalkyl” refers to one or more saturated cyclic hydrocarbons having from 3-12 or 3-10 carbon atoms, respectively, such as, but not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, adamantyl, and the like.
  • (C 5-10 )cycloalkenyl refers to a radical of one or more cyclic hydrocarbon having at least one double bond having from 5-10 carbon atoms such as, but not limited to, cyclopentenyl, cyclohexenyl, and the like.
  • cycloalkylene refers to a “cycloalkyl” group which has single bonds for attachment at two different carbon atoms.
  • (C 1-6 )alkylaminocarbonyl and “di-(C 1-6 )alkylaminocarbonyl” refer to straight or branched chain hydrocarbon groups having 1 to 6 carbon atoms connected to NC( ⁇ O).
  • exemplary alkyl groups include but are not limited to methyl, ethyl, propyl, isopropyl, n-butyl, t-butyl, isobutyl, pentyl, hexyl, and the like.
  • (C 1-6 )alkylcarbonyl refers to linear or branched chain and cyclic hydrocarbon groups having 1 to 6 carbon atoms connected to C( ⁇ O).
  • exemplary alkyl groups include but are not limited to methyl, ethyl, propyl, isopropyl, n-butyl, t-butyl, isobutyl, pentyl, hexyl, and the like.
  • (C 3-8 )cycloalkylcarbonyl refers to cyclic hydrocarbon groups having 3 to 8 carbon atoms connected to C( ⁇ O).
  • exemplary cycloalkyl groups include but are not limited to cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, and the like.
  • (C 1-10 )alkoxy refers to “O” connected to alkyl, having linear or branched chains and may include cyclic portions, having from 1-10, 1-8 or 1-6 carbon atoms, respectively.
  • linear alkoxy groups include but are not limited to methoxy, ethoxy, propoxy, butoxy, pentoxy, hexoxy, and the like.
  • branched alkoxy include but are not limited to isoprpoxy, sec-butoxy, tert-butoxy, isopentoxy, isohexoxy, and the like.
  • cyclic alkoxy include but are not limited to cyclopropyloxy, cyclobutyloxy, cyclopentyloxy, cyclohexyloxy, and the like.
  • aryloxy refers to an aryl group bonded to O.
  • alkanoyl alone or as part of another group, refers to alkyl linked to a carbonyl group.
  • alkylene refers to alkyl groups which have single bonds for attachment at two different carbon atoms.
  • alkenylene refers to alkenyl groups which have single bonds for attachement at two different carbon atoms.
  • alkynylene refers to alkynyl groups which have single bonds for attachement at two different carbon atoms.
  • aryl refers to monocyclic, bicyclic, or tricyclic carbocyclic aromatic ring systems having 6 to 14 carbon atoms in the ring portion.
  • aryl groups include but are not limited to phenyl, naphthyl, biphenyl, anthracenyl, azulenyl, and the like.
  • Aryl is also intended to include the partially hydrogenated derivatives of the carbocyclic systems including 1,2,3,4-tetrahydro-naphthyl, indanyl and the like.
  • aryl examples include but are not limited to phenyl, biphenyl, indenyl, naphthyl (1-naphthyl, 2-naphthyl), anthracenyl (1-anthracenyl, 2-anthracenyl, 3-anthracenyl), and the like.
  • arylalkenyl and “arylalkynyl” alone or as part of another group refer to alkenyl and alkynyl groups as described above having an aryl substituent.
  • halogen and “halo” refers to chloro, fluoro, bromo or iodo.
  • alkylamino alone or as part of another group includes any of the above alkyl, aryl or arylalkyl groups linked to a nitrogen atom.
  • substituted amino refers to amino substituted with one or two substituents, which may be the same or different, such as alkyl, aryl, arylalkyl, heteroaryl, heteroarylalkyl, cycloheteroalkyl, cycloheteroalkylalkyl, cycloalkyl, cycloalkylalkyl haloalkyl, hydroxyalkyl, alkoxyalkyl or thioalkyl. These substituents may be further substituted with any of the groups as set out above.
  • alkylthio alone or as part of another group includes any of the above alkyl, aralkyl or aryl groups linked to a sulfur atom.
  • acyl by itself or part of another group refers to an organic radical linked to a carbonyl group; examples of acyl groups include any of the groups attached to a carbonyl, such as alkanoyl, alkenoyl, aroyl, aralkanoyl, heteroaroyl, cycloalkanoyl, cycloheteroalkanoyl, and the like.
  • Naturally occurring ⁇ -amino acid sidechain refers to the moieties (sidechains) attached to the ⁇ -amino carbon in the following naturally occurring ⁇ -amino acids: glycine, alanine, 2-aminobutyric acid, valine, leucine, isoleucine, tert-leucine, serine, threonine, cysteine, asparagine, aspartic acid, glutamine, glutamic acid, phenylalanine, histidine, tryptophan, tyrosine, phenylglycine, lysine, methionine, and arginine.
  • the side chains of these amino acids are well known in the art.
  • the ⁇ -amino acid sidechain of alanine is methyl
  • the sidechain of phenylalanine is benzyl
  • the sidechain of tert-leucine is tert-butyl.
  • polyhaloalkyl refers to an “alkyl” group as defined above which includes from 2 to 9, preferably from 2 to 5, halo substituents, such as F or Cl, preferably F, such as CF 3 CH 2 , CF 3 or CF 3 CF 2 CH 2 .
  • polyhaloalkoxy refers to an “alkoxy” or “alkyloxy” group as defined above which includes from 2 to 9, preferably from 2 to 5, halo substituents, such as F or Cl, preferably F, such as CF 3 CH 2 O, CF 3 O or CF 3 CF 2 CH 2 O.
  • polycyclic and “polycycle” refer to two or more rings (e.g., cycloalkyls, cycloalkenyls, aryls, heteroaryls and/or cycloheteroalkyls) in which two or more carbons are common to two adjoining rings, e.g., the rings are “fused rings.” Fused rings that are joined through nonadjacent atoms, are also known as “bridged” rings.
  • Each of the rings of the polycycle can be substituted with such substituents as described above, as for example, halogen, alkyl, aralkyl, alkenyl, alkynyl, cycloalkyl, hydroxyl, amino, nitro, sulfhydryl, imino, amido, phosphonate, phosphinate, carbonyl, carboxyl, silyl, ether, alkylthio, sulfonyl, ketone, aldehyde, ester, a heterocyclyl, an aromatic or heteroaromatic moiety, trifluoromethyl, cyano, or the like.
  • substituents as described above, as for example, halogen, alkyl, aralkyl, alkenyl, alkynyl, cycloalkyl, hydroxyl, amino, nitro, sulfhydryl, imino, amido, phosphonate, phosphinate, carbonyl, carboxyl, si
  • a flame dried round bottom flask equipped with a magnetic stir bar was charged with N-Boc-pyrrolidine (20 g, 117 mmol, 1 eq) and dry THF (60 mL) under a nitrogen atmosphere.
  • the clear colorless solution was cooled to ⁇ 78° C. and a solution of s-BuLi (100 mL of a 1.4 M solution in cyclohexane, 140 mmol) was added slowly over a 30 minute period.
  • the light orange colored solution was stirred at ⁇ 78° C. for 3 hours followed by treatment with B(OMe) 3 (39 mL, 350 mmol) after which the cooling bath was removed and the clear colorless solution slowly warmed to 0° C.
  • the reaction Upon reaching 0° C., the reaction was quenched with a small amount of water ( ⁇ 2 mL), allowed to warm to room temp then extracted into 2 N NaOH (250 mL) and backwashed with additional EtOAc (150 mL). The aqueous phase was acidified to pH 3 by the addition of 2 N HCl and then extracted with EtOAc (3 ⁇ 120 mL). The organic extracts were combined and dried over Na 2 SO 4 and concentrated to produce the free boronic acid (22.08 g, 103 mmol) as a sticky white solid in 88% yield.
  • Crystallization and isolation of the desired isomer was performed by dissolving the HCl salt in a minimal amount of dichloromethane (250 mL) with gentle heating to facilitate a homogenous solution followed by continuous stirring for 8 hours to yield a fluffy white precipitate that was collected by vacuum filtration, dried and then dissolved in minimal 2-propanol ( ⁇ 200 mL) with gentle heating until homogenous. The alcoholic solution was stirred over night and the resulting white precipitate was collected by vacuum filtration affording isomerically pure 1 as a white solid. (7.0 g, 27 mmol, 23% yield).
  • Step 1 (2R)-1-(2-Chloroacetyl)-boroPro-(1S,2S,3R,5S)-pinanediol ester (3A).
  • Step 2 (2R)-1-(2-Cyclopentylamino-acetyl)-boroPro-(1S,2S,3R,5S)-pinanediol ester (3B).
  • Step 1 N-Boc-5-phenylPro-(2R)-boroPro-(1S,2S,3R,5S)-pinanediol ester (5):
  • Step 2 1-(5R-Phenyl-pyrrolidine-2S-carbonyl)-pyrrolidine-(2R)-boronic acid (6):
  • aqueous layer was separated and applied to a Dowex 50-X2-100 ion exchange column (H + form) and eluted with water until the eluate was neutral. Elution was continued with aqueous ammonium hydroxide (2 wt %) and the appropriate fractions were lyophilized to afford the free boronic acid B1 (76 mg, 0.26 mmol) as an amorphous white solid.
  • Step 1 (2R)-1-[(2S,4S)-1-tert-Butoxycarbonyl-4-benzyloxycarbonylamino-pyrrolidine-2-carbonyl]-boroPro-(1S,2S,3R,5S)-pinanediol ester (13)

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Abstract

Dipeptidyl peptidase IV (DPP-IV)-inhibiting compounds are provided that have formula I:

Figure US20070185061A1-20070809-C00001

wherein n is 1 to 3; X is CH2; S; O; CF2 or C(CH3)2; Z is H; halogen; hydroxyl; (C1-6)alkoxy; (C1-12)alkyl; (C3-12)cycloalkyl; phenyl; or heteroaryl; where the phenyl and heteroaryl groups are optionally mono- or independently plurisubstituted with R7; optionally, X together with an adjacent ring carbon and Z form a fused cyclopropyl; and optionally, one of the bonds in the ring containing X is a double bond; and CRiRii, R1, R2, R3, R4 and R5 are as described herein.

Description

    RELATED APPLICATIONS
  • This application is a Divisional application under 37 C.F.R. 1.53(b) of U.S. application Ser. No. 10/514,575, filed Nov. 15, 2004, which is a National Stage Filing under 35 U.S.C. 371 of International Application No. PCT/US2004/037820, and published on May 26, 2005 as WO 2005/047297, which claims priority to U.S. Provisional Application Ser. No. 60/519,566, filed Nov. 12, 2003, which is related to U.S. Provisional Application Ser. No. 60/557,011, filed Mar. 25, 2004, and to U.S. Provisional Application Ser. No. 60/592,972, filed Jul. 30, 2004, all of which applications and publication are incorporated herein by reference.

  • FIELD OF THE INVENTION
  • The present invention relates to boronic acid compounds and their use as inhibitors of post-proline/alanine cleaving amino-dipeptidases. The invention also relates to methods of employing such inhibitors to treat DPP-related diseases. Thus, the invention has applications in the medicinal chemical, pharmacological, and medical arts.

  • BACKGROUND OF THE INVENTION
  • Dipeptidyl peptidases (DPP) are a family of serine protease that belongs to a group of post-proline/alanine cleaving amino-dipeptidases. While the physiological role of DPPs have not been fully elucidated, they have been implicated in a number of disease states. For example, DPP-IV catalyzes the release of an N-terminal dipeptide only from proteins with N-terminal penultimate proline or alanine and DPP-IV is believed to play an important role in impaired fasting glucose (IFG) and diabetes. In particular, DPP-IV has been implicated in the control of glucose metabolism because its substrates include the insulinotropic hormones, glucagon like peptide-1 (GLP-1) and gastric inhibitory peptide (GIP), which are inactivated by removal of their two N-terminal amino acids.

  • In vivo administration of synthetic inhibitors of DPP-IV prevents N-terminal degradation of GLP-1 and GIP, resulting in higher plasma concentrations of these hormones, increased insulin secretion and, therefore, improved glucose tolerance. Therefore, such inhibitors have been proposed for the treatment of patients with type II diabetes, a disease characterized by decreased glucose tolerance and insulin resistance.

  • Accordingly, a need exists for compounds that are useful for inhibiting DPPs such as DPP-IV.

  • SUMMARY OF THE INVENTION
  • The present invention provides DPP inhibitors that are effective in treating conditions that may be regulated or normalized by inhibition of DPPs. More particularly, the invention relates to boronic acid-containing heterocycles and their derivatives that inhibit DPP-IV.

  • DETAILED DESCRIPTION OF THE INVENTION
  • The present invention provides compounds of formula I:

    Figure US20070185061A1-20070809-C00002

    including all enantiomers, diastereoisomers, solvates, hydrates and pharmaceutically acceptable salts thereof, wherein:

  • n is 1 to 3;

  • X is CH2; S; O; CF2 or C(CH3)2;

  • Z is H; halogen; hydroxyl; (C1-6)alkoxy; (C1-12)alkyl; (C3-12)cycloalkyl; phenyl; or heteroaryl; where the phenyl and heteroaryl groups are optionally mono- or independently plurisubstituted with R7;

  • R7 is halogen; (C1-10)alkyl; (C1-10)alkoxy; (C1-10)alkylamino; (C1-10) dialkylamino; benzyl; benzyloxy; hydroxyl(C1-6)alkyl; hydroxymethyl; nitro; trifluoromethyl; trifluoromethoxy; trifluoromethylthio; N-hydroxyamino; cyano; carboxy; acetamido; hydroxy; sulfamoyl; sulfonamido; or carbamoyl;

  • optionally, X together with an adjacent ring carbon and Z form a fused cyclopropyl; and

  • optionally, one of the bonds in the ring containing X is a double bond;

  • R1 and R2 independently or together are hydrogen; a boronic acid protecting group; or a group capable of being hydrolyzed to a hydroxyl group in an aqueous solution at physiological pH or in biological fluids; and

  • CRiRii may be present or absent, and

  • when CRiRii is present, then

      • Ri, Rii, R3, R4 and R5 are selected from (aa) or (bb):
      • (aa) Ri, Rii, R3 and R4 are hydrogen; and R5 is hydrogen, (C1-12)alkyl or (C3-12) cycloalkyl;
      • (bb) Ri, Rii, R3, R4 and R5 are independently hydrogen; alkyl; alkenyl; alkynyl; cycloalkyl; cycloalkylalkyl; bicycloalkyl; tricycloalkyl; alkylcycloalkyl; hydroxyalkyl; hydroxyalkylcycloalkyl; hydroxycycloalkyl; hydroxybicycloalkyl; hydroxytricycloalkyl; bicycloalkylalkyl; alkylbicycloalkyl; alkylthioalkyl; arylalkylthioalkyl; cycloalkenyl; aryl, aralkyl; heteroaryl; heteroarylalkyl; cycloheteroalkyl or cycloheteroalkylalkyl; all optionally mono- or independently plurisubstituted with halogen, alkyl, polyhaloalkyl, alkoxy, haloalkoxy, polyhaloalkoxy, alkoxycarbonyl, alkenyl, alkynyl, cycloalkyl, cycloalkylalkyl, polycycloalkyl, heteroarylamino, arylamino, cycloheteroalkyl, cycloheteroalkylalkyl, hydroxy, hydroxyalkyl, nitro, cyano, amino, substituted amino, alkylamino, dialkylamino, thiol, alkylthio, alkylcarbonyl, acyl, alkoxycarbonyl, aminocarbonyl, alkynylamino-carbonyl, alkylaminocarbonyl, alkenylaminocarbonyl, alkylcarbonyloxy, alkylcarbonylamino, arylcarbonylamino, alkylsulfonylamino, alkylaminocarbonyl-amino, alkoxycarbonylamino, alkylsulfonyl, aminosulfinyl, aminosulfonyl, alkylsulfinyl, sulfonamido or sulfonyl,
  • or alternatively,

  • when CRiRii is absent, then R3, R4 and R5 are selected from (cc), (dd) or (ee):

      • (cc) R3 and R4 are hydrogen; and
        • R5 is
          • a) hydrogen, provided that R5 is not hydrogen when n is 1, X is CH2, and Z is H;
          • b) (C1-12)alkyl; (C2-12)alkenyl; (C2-12)alkynyl; (C3-12)cycloalkyl; or (C3-12)cycloalkenyl; where the alkyl, alkenyl, alkynyl, cycloalkyl and cycloalkenyl groups are optionally mono- or independently plurisubstituted with R6, and where the alkyl, alkenyl, alkynyl portions include linear or branched chains and may include cyclic portions;
          • R6 is (C1-6)alkyl; (C1-6)alkoxy; cycloalkyl; carboxy; acetamido; cyano; nitro; halogen; hydroxy; hydroxy(C1-6)alkyl; hydroxymethyl; trifluoromethyl; trifluoromethoxy; sulfamoyl; sulfonamido; carbamoyl; aryl; heteroaryl; where the aryl and heteroaryl groups are optionally mono- or independently plurisubstituted with R7; amino, where the amino group is optionally mono- or independently plurisubstituted with R8; —SOR8; —SO2R8; —COR8; —CO2R8, —CONHR8; —CON(R8)2; —OR8; or —S—R8;
          • R7 is halogen; (C1-10)alkyl; (C1-10)alkoxy; (C1-10)alkylamino; (C1-10) dialkylamino; benzyl; benzyloxy; hydroxyl(C1-6)alkyl; hydroxymethyl; nitro; trifluoromethyl; trifluoromethoxy; trifluoromethylthio; N-hydroxyamino; cyano; carboxy; acetamido; hydroxy; sulfamoyl; sulfonamido; or carbamoyl;
          • R8 is (C1-10)alkyl; (C2-10)alkenyl; (C2-10)alkynyl; (C3-10)cycloalkyl; (C5-10)cycloalkenyl; benzyl; phenethyl; aryl; or heteroaryl; where the alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl groups are optionally mono- or independently plurisubstituted with aryl or heteroaryl where the aryl and heteroaryl groups are optionally mono- or independently plurisubstituted with R7;
          • c) aryl optionally fused to a (C3-10)cycloalkyl; or heteroaryl optionally fused to a (C3-10)cycloalkyl; where the aryl and heteroaryl groups are optionally mono- or independently plurisubstituted with R7;
          • d) indanyl; 1,2,3,4-tetrahydronaphthyl; (CH2)j adamantyl in which j is 0-3; or a [2.2.1] or [3.1.1] bicyclic carbocyclic moiety, including (4-pentylbicyclo[2.2.2]oct-1-yl)amine; where the indanyl, 1,2,3,4-tetrahydronaphthyl, (CH2)j adamantyl, and [2.2.1] or [3.1.1] bicyclic carbocyclic moieties are optionally mono- or independently plurisubstituted with hydroxy, (C1-8)alkyl, (C1-8)alkoxy, (C1-8)alkanoyloxy, or R9R10N—CO—O—, where R9 and R10 are independently (C1-8)alkyl, or phenyl, where the alkyl and phenyl groups are optionally mono- or independently plurisubstituted with (C1-8)alkyl, (C1-8)alkoxy, halogen, or trifluoromethyl, or R9 and R10 together are (C3-6)alkylene;
          • e) R11(CH2)p— where R11 is 2-oxopyrrolidinyl; (C1-6)alkoxy; phenyl; phenoxy; (C1-8)cycloalkyl; [3.3.3] bicyclic carbocyclic moiety; pyridinyl; naphthyl; cyclohexenyl; or adamantyl; where the 2-oxopyrrolidinyl, (C1-6)alkoxy, phenyl, pyridinyl, and naphthyl groups are optionally mono- or independently di- or independently trisubstituted with R12; where the phenoxy group is optionally mono- or independently disubstituted with (C1-4)alkyl, (C1-4)alkoxy, or halogen; and where the [3.3.3] bicyclic carbocyclic moiety is optionally mono- or independently plurisubstituted with (C1-8)alkyl; and p is 0 to 3;
          • R12 is halogen; trifluoromethyl; cyano; nitro; (C1-6)alkyl; (C1-6)alkoxy; cycloalkyl; carboxy; acetamido; hydroxy; hydroxy(C1-6)alkyl; hydroxymethyl; trifluoromethoxy; sulfamoyl; carbamoyl; sulfonamido; alkylsufonyl; phenylsulfonyl; aryl; heteroaryl; where the aryl and heteroaryl groups are optionally mono- or independently plurisubstituted with R7;
          • f) (R13)2CH(CH2)q—, where R13 is phenyl; in which the phenyl groups are independently optionally mono- or independently disubstituted with R12; and q is 0 to 3;
          • g) a group of the formula:

            Figure US20070185061A1-20070809-C00003


            where R14 and R15 are independently hydrogen; (C1-8)alkyl; (C1-6)alkylcarbonyl; (C3-12)cycloalkyl ring; (C3-12)cycloalkenyl ring; benzyl; benzoyl; pyridine; pyrimidine; phenyl; phenylamino-carbonyl; alkylsulfonyl; or phenylsulfonyl; where the cycloalkyl ring is optionally substituted with hydroxy(C1-6)alkyl, and where the benzyl, benzoyl, pyridine, pyrimidine, phenyl, phenylaminocarbonyl, alkylsulfonyl, and phenylsulfonyl groups are optionally mono- or independently di-substituted with R12; or R14 and R15 together form a (C3-12)cycloalkyl ring; and r is 2 to 6;
      • h) a group of the formula:

        Figure US20070185061A1-20070809-C00004


        where R16 and R17 are each independently hydrogen; (C1-8)alkyl; (C1-6)alkylcarbonyl; di-(C1-6)alkylaminocarbonyl; benzyl; benzoyl; pyridine; pyrimidine; phenyl; phenylaminocarbonyl; alkylsulfonyl; or phenylsulfonyl; where the benzyl, benzoyl, pyridine, pyrimidine, phenyl, phenylaminocarbonyl, alkylsulfonyl, and phenylsulfonyl groups are optionally mono- or independently di-substituted with R12; or R16 and R17 together form a (C3-12)cycloalkyl ring; and s is 1 to 6;
      • i) a group of the formula:

        Figure US20070185061A1-20070809-C00005


        wherein R18 and R19 are independently hydrogen; (C1-8)alkyl; (C1-6)alkylcarbonyl; di-(C1-6)alkylaminocarbonyl; benzyl; benzothiazole; benzoyl; pyridine; pyrimidine; phenyl; phenylaminocarbonyl; alkylsulfonyl; or phenylsulfonyl; where the benzyl, benzoyl, benzothiazole, pyridine, pyrimidine, phenyl, phenylaminocarbonyl, alkylsulfonyl, and phenylsulfonyl groups are optionally mono- or independently di-substituted with R2; or wherein R18 and R19 together with the N form an (N, C3-12) heterocycloalkyl ring containing the nitrogen atom; and each t is independently 0 to 6; and u is 0 to 3;
      • j) a group of the formula:
        (phenyl-CH2—C(CH3)2—),
        where the phenyl group is optionally mono- or independently plurisubstituted with R12;
        ; or
      • k) a group of the formula:

        Figure US20070185061A1-20070809-C00006


        where R21 is hydrogen; (C1-8)alkyl; benzyl; or phenyl; in which the benzyl and phenyl groups are optionally mono- or independently di-substituted on the ring with R12; each t is independently 0 to 6; and u is 0 to 3; and,
        wherein a bond containing a wavy line signifies a point of attachment;
      • (dd) R3, R4 and R5 are independently hydrogen; alkyl; alkenyl; alkynyl; cycloalkyl; cycloalkylalkyl; bicycloalkyl; tricycloalkyl; alkylcycloalkyl; hydroxyalkyl; hydroxyalkylcycloalkyl; hydroxycycloalkyl; hydroxybicycloalkyl; hydroxytricycloalkyl; bicycloalkylalkyl; alkylbicycloalkyl; alkylthioalkyl; arylalkylthioalkyl; cycloalkenyl; aryl or aralkyl; all optionally mono- or independently plurisubstituted with halogen, alkyl, polyhaloalkyl, alkoxy, haloalkoxy, polyhaloalkoxy, alkoxycarbonyl, alkenyl, alkynyl, cycloalkyl, cycloalkylalkyl, polycycloalkyl, arylamino, hydroxy, hydroxyalkyl, nitro, cyano, amino, substituted amino, alkylamino, dialkylamino, thiol, alkylthio, alkylcarbonyl, acyl, alkoxycarbonyl, aminocarbonyl, alkynylamino-carbonyl, alkylaminocarbonyl, alkenylaminocarbonyl, alkylcarbonyloxy, alkylcarbonylamino, arylcarbonylamino, alkylsulfonylamino, alkylaminocarbonyl-amino, alkoxycarbonylamino, alkylsulfonyl, aminosulfinyl, aminosulfonyl, alkylsulfinyl, sulfonamido or sulfonyl, provided that when n is 1, X is CH2, the ring containing X is saturated, and Z, R3 and R5 are H, R4 is not a side chain of a naturally occurring α-amino acid, and provided that when n is 1, X is CH2, the ring containing X is saturated, and Z and R5 are H, R3 and R4 are not both methyl; or,
      • (ee) R3 is hydrogen, and R4 and R5 together with the atoms to which they are attached form a 4 to 8 membered heterocyclic ring of 3 to 7 carbons and 1 nitrogen,
        wherein the heterocyclic ring carbon atoms other than the carbon connected to N and R4 have the formula —(CR22R23)m— wherein m is 2 to 6, and R22 and R23 are independently hydrogen, hydroxyl, alkoxy, alkyl, alkenyl, alkynyl, cycloalkyl, halo, amino, substituted amino, cycloalkylalkyl, cycloalkenyl, aryl, arylalkyl, heteroaryl, heteroarylalkyl, cycloheteroalkyl, cycloheteroalkylalkyl, alkylcarbonylamino, arylcarbonylamino, alkoxycarbonylamino, aryloxycarbonylamino, alkoxycarbonyl, aryloxycarbonyl, or alkylaminocarbonylamino; and, optionally the heterocyclic ring has an aryl, heteroaryl or a 3 to 7 membered cycloalkyl ring fused thereto, provided that when n is 1, X is CH2, the ring containing X is saturated, and Z and R3 are H, then R4 and R5 together are not —(CH2)2— or —(CH2)3—.
  • Compounds of formula I also include those wherein X is CH2; the ring containing X is saturated; CRiRii is absent, R1, R2 are hydrogen; and R3, R4 and R5 have the subgeneric designations given by foregoing cause (cc)b). In some such embodiments, R5 is a (C1-12)alkyl or (C3-12)cycloalkyl, including, but not limited to, methyl, ethyl, n-propyl, isopropyl, n-butyl, isobutyl, sec-butyl, tert-butyl, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cyclohexylmethyl, 1-cyclohexylethyl, or adamantyl.

  • In some embodiments of compounds of formula I, X is CH2; the ring containing X is saturated; CRiRii is absent, R1, R2 are hydrogen; and R3, R4 and R5 have the subgeneric designation given by foregoing clause (cc)d).

  • In other embodiments of compounds of formula I, X is CH2; the ring containing X is saturated; CRiRii is absent, R1, R2 are hydrogen; and R3, R4 and R5 have the subgeneric designation given by foregoing clause (cc)e).

  • In certain embodiments of compounds of formula I, X is CH2; the ring containing X is saturated; CRiRii is absent; R1, R2, are hydrogen; and R3, R4 and R5 have the subgeneric designation given by foregoing clause (cc)f).

  • In some embodiments of compounds of formula I, X is CH2; the ring containing X is saturated; CRiRii is absent, R1, R2 are hydrogen; R3, R4 and R5 have the subgeneric designation given by foregoing clause (cc)g.

  • Compounds of formula I include those wherein X is CH2; the ring containing X is saturated; CRiRii is absent, R1, R2 are hydrogen; R3, R4 and R5 have the subgeneric designation given by foregoing clause (cc)h.

  • Compounds of formula I wherein X is CH2; the ring containing X is saturated; CRiRii is absent, R1, R2 are hydrogen; R3, R4 and R5 have the subgeneric designation given by foregoing clause (cc)i).

  • In some embodiments of compounds of formula I, X is CH2; the ring containing X is saturated; CRiRii is absent, R1, R2 are hydrogen; R3, R4 and R5 have the subgeneric designation given by foregoing clause (cc)j.

  • In some embodiments of compounds of formula I, X is CH2; the ring containing X is saturated; CRiRii is absent, R1, R2 are hydrogen; R3, R4 and R5 have the subgeneric designation given by foregoing clause (cc)k.

  • A preferred subgeneric formulation of the invention when CRiRii of Formula I is absent includes compounds of Formula II having the following linear alkyl pyrrolidine formula:

    Figure US20070185061A1-20070809-C00007

  • In embodiments of Formula II, R3, R4 and R5 are defined as given for groups (cc), (dd) and (ee) as given above for Formula I, and R1 and R2 independently or together are —OH, —O M+ wherein M+ is a cation, a hydroxyl bearing a boronic acid protecting group, or a group capable of being hydrolyzed to a hydroxyl group in an aqueous solution at physiological pH or in biological fluids.

  • In such embodiments of Formula II, R5 may be alkyl, cycloalkyl, optionally mono- or independently plurisubstituted as described above.

  • In some embodiments of compounds of Formula II, R3 and R4 are both hydrogen.

  • In other embodiments of Formula II, n is 1.

  • Included also are compounds of formula II wherein X is CH2; the ring containing X is saturated; R1, R2, R3 and R4 are hydrogen; and R5 is a group of the formula:

    Figure US20070185061A1-20070809-C00008

    where R21 is hydrogen; (C1-8)alkyl; benzyl; or phenyl; in which the benzyl and phenyl groups are optionally mono- or independently di-substituted on the ring with R2; each t is independently 0 to 6; and u is 0 to 3. In some such embodiments, R5 has formula:

    Figure US20070185061A1-20070809-C00009

  • Another preferred subgeneric formulation of Formula I when CRiRii is present includes compounds of formula III:

    Figure US20070185061A1-20070809-C00010

  • wherein R1 and R2 independently or together are —OH, —O M+ wherein M+ is a cation, a hydroxyl bearing a boronic acid protecting group, or a group capable of being hydrolyzed to a hydroxyl group in an aqueous solution at physiological pH or in biological fluids; and, R3, R4, R5, Ri and Rii are the same as are designated for groups (aa) and (bb) of foregoing Formula I.

  • The invention also relates to methods for preparing the above-described compounds. As shown below and as described in the EXAMPLES, the compounds of formula II and III are prepared by reacting a cyclic amine (e.g., pyrrolidine or piperidine), suitably protected with a standard protecting group such as Boc-, Fmoc-, CBz- or the like, with sec-BuLi/TMEDA followed by B(OCH3)3, to provide the methyl boronic ester derivative. Acid hydrolysis of the methyl esters with 2N HCl provides the boronic acid intermediate 1. Reaction of 1 with (+) pinanediol, deprotection of the amino protecting group, and recrystallization provides the pinanediol ester 2 as an isomerically pure salt.

  • Intermediate 2 is useful for the synthesis of both series A and series B compounds. For example, N-acylation of 2 with chloroacetyl chloride provides the α-chloro amide 3. Treatment of 3 with Na2CO3 and cyclopentylamine, and hydrolysis of the pinanediol boronic ester, provides a compound of formula I, 4. Alternatively, coupling of intermediate 2 with N-Boc-5-phenyl-Pro using EDAC/HOBT provides amide 5. Deprotection of the amino group and hydrolysis of the boronic esters, provides a compound of formula II, 6.

    Figure US20070185061A1-20070809-C00011

  • This synthetic scheme is adaptable for the preparation of all the compounds of the invention, by reacting the appropriate cyclic amine (pyrrollidine, piperidine, and other cyclic amines) with sec-BuLi/B(OCH3)3, and coupling the boronic ester intermediate with the desired acid chloride or acid via routes A or B, respectively. The appropriate cyclic amine may either be commercially available or is easily synthesized through known procedures, for example, those procedures disclosed in U.S. Pat. Nos. 6,617,340; 6,432,969; 6,380,398; 6,172,081; 6,166,063; 6,124,305; 6,110,949; 6,107,317; 6,011,155; and 6,395,767, which are hereby incorporated by reference in their entirety.

  • Thus, another aspect of the invention provides a process for preparing the compounds of formula I:

    Figure US20070185061A1-20070809-C00012

  • by coupling a reactive compound of formula:

    Figure US20070185061A1-20070809-C00013

    with an amine of formula: R5—NT2; optionally deprotecting the boronic acid ester; and recovering the resultant compound as a free acid or as an acid addition salt; wherein L is a leaving group. R1, R2, R3, R4, Ri, Rii, n, X, and Z are as defined herein. Preferred embodiments are those where R3 and R4 are hydrogen, L is halogen, including but not limited to Cl, and R5—NH2 is cyclopentylamine.

  • The compounds of the invention may be prepared in the form of pharmaceutically acceptable salts, especially acid-addition salts, including salts of organic acids and mineral acids. Examples of such salts include salts of organic acids such as formic acid, fumaric acid, acetic acid, propionic acid, glycolic acid, lactic acid, pyruvic acid, oxalic acid, succinic acid, malic acid, tartaric acid, citric acid, benzoic acid, salicylic acid and the like. Suitable inorganic acid-addition salts include salts of hydrochloric, hydrobromic, sulphuric and phosphoric acids and the like. Further examples of pharmaceutically acceptable inorganic or organic acid addition salts include the pharmaceutically acceptable salts listed in Journal of Pharmaceutical Science, 66, 2 (1977) which are known to the skilled artisan.

  • The acid addition salts may be obtained as the direct products of compound synthesis. In the alternative, the free base may be dissolved in a suitable solvent containing the appropriate acid, and the salt isolated by evaporating the solvent or otherwise separating the salt and solvent.

  • The compounds of this invention may form solvates with standard low molecular weight solvents, including water to yield hydrates, using methods known to the skilled artisan.

  • It is to be understood that the invention extends to all of the stereoisomeric forms of the claimed compounds, including enantiomers and diastereomers, as well as the racemates.

  • Pharmaceutical Compositions

  • Pharmaceutical compositions containing a compound of the invention of the invention may be prepared by conventional techniques, e.g. as described in Remington: The Science and Practise of Pharmacy, 19th Ed., 1995. The compositions may appear in conventional forms, for example capsules, tablets, aerosols, solutions, suspensions or topical applications.

  • The compounds of the invention are effective for DPP-IV inhibition over a wide dosage range. For example, in the treatment of adult humans, dosages from about 0.05 to about 1000 mg, preferably from about 1 to about 500 mg, per day may be used. A typical dosage is about 10 mg to about 500 mg per day. In choosing a regimen for patients it may frequently be necessary to begin with a higher dosage and when the condition is under control to reduce the dosage. The exact dosage will depend upon the mode of administration, on the therapy desired, form in which administered, the subject to be treated and the body weight of the subject to be treated, and the preference and experience of the physician or veterinarian in charge.

  • Generally, the compounds of the invention are dispensed in unit dosage form comprising from about 0.05 to about 1000 mg of active ingredient together with a pharmaceutically acceptable carrier per unit dosage.

  • DEFINITIONS
  • By “substantially pure” in relation to compounds of the invention such as, but not limited to, those of formula VA and VB, it is meant that one isomer or the other, including all enantiomers, diastereoisomers, solvates, hydrates, and pharmaceutically acceptable salts thereof, represents at least 90% by weight of the composition. In some embodiments one isomer represents at least 98% by weight of the composition.

  • The term “boronic acid protecting group” as used herein refers to a moiety employed to block or protect the boronic acid functionality while reactions involving other functional sites of the compound are carried out. Typically, the boronic acid OH groups are protected as boronic acid esters derived from alchohols such as (+)-pinanediol; pinacol; 1,2-dicyclohexyl-ethanediol; 1,2-ethanediol; 2,2-diethanolamine; 1,3-propanediol; 2,3-butanediol, diisopropyl tartrate; 1,4-butanediol; diisopropylethanediol; (S,S,)-5,6-decanediol; 1,1,2-triphenyl-1,2-ethanediol; (2R,3R)-1,4-dimethyoxy-1,1,4,4-tetraphenyl-2,3-butanediol; methanol; ethanol; isopropanol; catechol; 1-butanol; and the like. As will be understood by those skilled in the art, alcohols having only a single hydroxy group, such as methanol, form diesters having the structure —B(OR)2 in which R is the organic moiety from the alcohol (e.g., —B(OMe)2). By comparison, diols such as pinacol form cyclic boronic diesters with —B(OH)2 in which the organic moiety (e.g., —C(Me)2—C(Me)2—)is attached to both oxygens.

  • The term “N-protecting group” or “N-protected” as used herein refers to those groups intended to protect the N-terminus of an amino acid or peptide or to protect an amino group against undesirable reactions during synthetic procedures. Commonly used N-protecting groups are disclosed in T. W. Greene, P. G. Wuts, “Protective Groups In Organic Synthesis, 3rd Ed.” (John Wiley & Sons, New York (1999)), which is hereby incorporated by reference. N-protecting groups comprise acyl groups such as formyl, acetyl, propionyl, pivaloyl, t-butylacetyl, 2-chloroacetyl, 2-bromoacetyl, trifluoroacetyl, trichloroacetyl, phthalyl, o-nitrophenoxyacetyl, α-chlorobutyryl, benzoyl, 4-chlorobenzoyl, 4-bromobenzoyl, 4-nitrobenzoyl, and the like; sulfonyl groups such as benzenesulfonyl, p-toluenesulfonyl and the like; carbamate forming groups such as benzyloxycarbonyl, p-chlorobenzyloxycarbonyl, p-methoxybenzyloxycarbonyl, p-nitrobenzyloxycarbonyl, 2-nitrobenzyloxycarbonyl, p-bromobenzyloxycarbonyl, 3,4-dimethoxybenzyloxycarbonyl, 3,5-dimethoxybenzyloxycarbonyl, 2,4-dimethoxybenzyloxycarbonyl, 4-methoxybenzyloxycarbonyl, 2-nitro-4,5-dimethoxybenzyloxycarbonyl, 3,4,5-trimethoxybenzyloxycarbonyl, 1-(p-biphenylyl)-1-methylethoxycarbonyl, α,α-di methyl-3,5-dimethoxybenzyloxycarbonyl, benzhydryloxycarbonyl, t-butyloxycarbonyl, diisopropylmethoxycarbonyl, isopropyloxycarbonyl, ethoxycarbonyl, methoxycarbonyl, allyloxycarbonyl, 2,2,2,-trichloroethoxycarbonyl, phenoxycarbonyl, 4-nitrophenoxycarbonyl, fluorenyl-9-methoxycarbonyl, cyclopentyloxycarbonyl, adamantyloxycarbonyl, cyclohexyloxycarbonyl, phenylthiocarbonyl and the like; alkyl groups such as benzyl, triphenylmethyl, benzyloxymethyl and the like; and silyl groups such as trimethylsilyl and the like. Preferred N-protecting groups are formyl, acetyl, benzoyl, pivaloyl, t-butylacetyl, phenylsulfonyl, benzyl, 9-fluorenylmethyloxycarbonyl (Fmoc), t-butyloxycarbonyl (Boc) and benzyloxycarbonyl (Cbz).

  • The term “alkyl” or “(C1-12)alkyl”, alone or in combination, refers to linear or branched chains and may include cyclic portions, having from 1-12 (the use of 1-12 herein implies each of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 and 12) carbon atoms, such as but not limited to, e.g. methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, tert-butyl, n-pentyl, 2-methylbutyl, 3-methylbutyl, n-hexyl, 4-methylpentyl, neopentyl, 2,2-dimethylpropyl, and the like.

  • The terms “(C1-10)alkyl”, “(C1-8)alkyl” and “(C1-6)alkyl”, alone or in combination, refers to linear or branched chains and may include cyclic portions, having from 1-10, 1-8, or 1-6 carbon atoms, respectively, such as but not limited to, e.g. methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, tert-butyl, n-pentyl, 2-methylbutyl, 3-methylbutyl, n-hexyl, 4-methylpentyl, neopentyl, 2,2-dimethylpropyl, and the like.

  • The term “(C1-4)alkyl”, alone or in combination, refers to linear or branched chains and may include cyclic portions, having from 1-4 carbon atoms, such as but not limited to, e.g. methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, tert-butyl, and the like.

  • The terms “(C2-12)alkenyl” and “(C2-10)alkenyl”, alone or in combination, refers to a straight or branched, unsaturated hydrocarbon chain having from 2-12 or 2-10 carbon atoms, respectively, and at least one double bond, such as, but not limited to, vinyl, 1-propenyl, allyl, isopropenyl, n-butenyl, n-pentenyl, n-hexenyl, and the like.

  • The terms “(C2-12)alkynyl” and “(C2-10)alkynyl”, alone or in combination, refers to an unsaturated hydrocarbon chain having from 2-12 or 2-10 carbon atoms, respectively, and at least one triple bond, such as but not limited to —C≡CH, —C≡C—CH3, —CH2C≡CH, —CH2—CH2—C≡CH, —CH(CH3)C≡CH, and the like.

  • The terms “(C3-12)cycloalkyl” and “(C3-10)cycloalkyl” refers to one or more saturated cyclic hydrocarbons having from 3-12 or 3-10 carbon atoms, respectively, such as, but not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, adamantyl, and the like.

  • The term “(C5-10)cycloalkenyl” refers to a radical of one or more cyclic hydrocarbon having at least one double bond having from 5-10 carbon atoms such as, but not limited to, cyclopentenyl, cyclohexenyl, and the like.

  • The term “cycloalkylene” refers to a “cycloalkyl” group which has single bonds for attachment at two different carbon atoms.

  • The terms “(C1-6)alkylaminocarbonyl” and “di-(C1-6)alkylaminocarbonyl” refer to straight or branched chain hydrocarbon groups having 1 to 6 carbon atoms connected to NC(═O). Exemplary alkyl groups include but are not limited to methyl, ethyl, propyl, isopropyl, n-butyl, t-butyl, isobutyl, pentyl, hexyl, and the like.

  • The term “(C1-6)alkylcarbonyl” refers to linear or branched chain and cyclic hydrocarbon groups having 1 to 6 carbon atoms connected to C(═O). Exemplary alkyl groups include but are not limited to methyl, ethyl, propyl, isopropyl, n-butyl, t-butyl, isobutyl, pentyl, hexyl, and the like.

  • The term (C3-8)cycloalkylcarbonyl refers to cyclic hydrocarbon groups having 3 to 8 carbon atoms connected to C(═O). Exemplary cycloalkyl groups include but are not limited to cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, and the like.

  • The terms “(C1-10)alkoxy”, “(C1-8)alkoxy” and “(C1-6)alkoxy”, alone or in combination, refers to “O” connected to alkyl, having linear or branched chains and may include cyclic portions, having from 1-10, 1-8 or 1-6 carbon atoms, respectively. Examples of linear alkoxy groups include but are not limited to methoxy, ethoxy, propoxy, butoxy, pentoxy, hexoxy, and the like. Examples of branched alkoxy include but are not limited to isoprpoxy, sec-butoxy, tert-butoxy, isopentoxy, isohexoxy, and the like. Examples of cyclic alkoxy include but are not limited to cyclopropyloxy, cyclobutyloxy, cyclopentyloxy, cyclohexyloxy, and the like.

  • The term “aryloxy” refers to an aryl group bonded to O.

  • The term “alkanoyl”, alone or as part of another group, refers to alkyl linked to a carbonyl group.

  • The term “alkylene” refers to alkyl groups which have single bonds for attachment at two different carbon atoms.

  • The term “alkenylene” refers to alkenyl groups which have single bonds for attachement at two different carbon atoms.

  • The terms “alkynylene” refers to alkynyl groups which have single bonds for attachement at two different carbon atoms.

  • The term “aryl” refers to monocyclic, bicyclic, or tricyclic carbocyclic aromatic ring systems having 6 to 14 carbon atoms in the ring portion. Examples of aryl groups include but are not limited to phenyl, naphthyl, biphenyl, anthracenyl, azulenyl, and the like. Aryl is also intended to include the partially hydrogenated derivatives of the carbocyclic systems including 1,2,3,4-tetrahydro-naphthyl, indanyl and the like.

  • Examples of “aryl” include but are not limited to phenyl, biphenyl, indenyl, naphthyl (1-naphthyl, 2-naphthyl), anthracenyl (1-anthracenyl, 2-anthracenyl, 3-anthracenyl), and the like.

  • The terms “arylalkenyl” and “arylalkynyl” alone or as part of another group refer to alkenyl and alkynyl groups as described above having an aryl substituent.

  • The terms “halogen” and “halo” refers to chloro, fluoro, bromo or iodo.

  • The term “alkylamino”, “arylamino”, or “arylalkylamino” alone or as part of another group includes any of the above alkyl, aryl or arylalkyl groups linked to a nitrogen atom.

  • The term “substituted amino” as employed herein alone or as part of another group refers to amino substituted with one or two substituents, which may be the same or different, such as alkyl, aryl, arylalkyl, heteroaryl, heteroarylalkyl, cycloheteroalkyl, cycloheteroalkylalkyl, cycloalkyl, cycloalkylalkyl haloalkyl, hydroxyalkyl, alkoxyalkyl or thioalkyl. These substituents may be further substituted with any of the groups as set out above.

  • The terms “alkylthio”, “arylthio” or “aralkylthio” alone or as part of another group includes any of the above alkyl, aralkyl or aryl groups linked to a sulfur atom.

  • The term “acyl” by itself or part of another group refers to an organic radical linked to a carbonyl group; examples of acyl groups include any of the groups attached to a carbonyl, such as alkanoyl, alkenoyl, aroyl, aralkanoyl, heteroaroyl, cycloalkanoyl, cycloheteroalkanoyl, and the like.

  • The phrase “naturally occurring α-amino acid sidechain” refers to the moieties (sidechains) attached to the α-amino carbon in the following naturally occurring α-amino acids: glycine, alanine, 2-aminobutyric acid, valine, leucine, isoleucine, tert-leucine, serine, threonine, cysteine, asparagine, aspartic acid, glutamine, glutamic acid, phenylalanine, histidine, tryptophan, tyrosine, phenylglycine, lysine, methionine, and arginine. The side chains of these amino acids are well known in the art. For example, the α-amino acid sidechain of alanine is methyl; the sidechain of phenylalanine is benzyl; and the sidechain of tert-leucine is tert-butyl.

  • The term “polyhaloalkyl” refers to an “alkyl” group as defined above which includes from 2 to 9, preferably from 2 to 5, halo substituents, such as F or Cl, preferably F, such as CF3CH2, CF3 or CF3CF2CH2.

  • The term “polyhaloalkoxy” refers to an “alkoxy” or “alkyloxy” group as defined above which includes from 2 to 9, preferably from 2 to 5, halo substituents, such as F or Cl, preferably F, such as CF3CH2O, CF3O or CF3CF2CH2O.

  • The terms “polycyclic” and “polycycle” refer to two or more rings (e.g., cycloalkyls, cycloalkenyls, aryls, heteroaryls and/or cycloheteroalkyls) in which two or more carbons are common to two adjoining rings, e.g., the rings are “fused rings.” Fused rings that are joined through nonadjacent atoms, are also known as “bridged” rings. Each of the rings of the polycycle can be substituted with such substituents as described above, as for example, halogen, alkyl, aralkyl, alkenyl, alkynyl, cycloalkyl, hydroxyl, amino, nitro, sulfhydryl, imino, amido, phosphonate, phosphinate, carbonyl, carboxyl, silyl, ether, alkylthio, sulfonyl, ketone, aldehyde, ester, a heterocyclyl, an aromatic or heteroaromatic moiety, trifluoromethyl, cyano, or the like.

  • EXAMPLES
  • A further detailed description of the invention is given with reference to the following non-limiting examples.

  • Example 1 Synthesis of (2R)-boroPro-(1S,2S,3R,5S)-pinanediol ester, hydrochloride (2)
  • A flame dried round bottom flask equipped with a magnetic stir bar was charged with N-Boc-pyrrolidine (20 g, 117 mmol, 1 eq) and dry THF (60 mL) under a nitrogen atmosphere. The clear colorless solution was cooled to −78° C. and a solution of s-BuLi (100 mL of a 1.4 M solution in cyclohexane, 140 mmol) was added slowly over a 30 minute period. The light orange colored solution was stirred at −78° C. for 3 hours followed by treatment with B(OMe)3 (39 mL, 350 mmol) after which the cooling bath was removed and the clear colorless solution slowly warmed to 0° C. Upon reaching 0° C., the reaction was quenched with a small amount of water (˜2 mL), allowed to warm to room temp then extracted into 2 N NaOH (250 mL) and backwashed with additional EtOAc (150 mL). The aqueous phase was acidified to pH 3 by the addition of 2 N HCl and then extracted with EtOAc (3×120 mL). The organic extracts were combined and dried over Na2SO4 and concentrated to produce the free boronic acid (22.08 g, 103 mmol) as a sticky white solid in 88% yield. Without further purification the boronic acid was dissolved in tert-butyl methyl ether (150 mL) and with constant stirring (+)-pinanediol (17.5 g, 103 mmol) was added at room temperature. After 18 hr the ether was removed and the (+)-pinanediol boronic ester was purified by column chromatography (silica gel, 1:3 hexanes/EtOAc) to give a clear thick oil (26.84 g, 76.8 mmol, 76% yield, Rf=0.6 using a 2:1 hexane/ethyl acetate eluant, made visual via I2 and/or PMA stain). Removal of the Boc protecting group was achieved by dissolving the oil in dry ether, cooling to 0° C. in an ice bath and with constant stirring dry HCl (g) was bubbled into the solution for 10 minutes. After 2 hours a white precipitate developed in the flask and the ether and excess HCl were removed in vacuo to afford the racemic HCl salt as a white solid. Crystallization and isolation of the desired isomer was performed by dissolving the HCl salt in a minimal amount of dichloromethane (250 mL) with gentle heating to facilitate a homogenous solution followed by continuous stirring for 8 hours to yield a fluffy white precipitate that was collected by vacuum filtration, dried and then dissolved in minimal 2-propanol (˜200 mL) with gentle heating until homogenous. The alcoholic solution was stirred over night and the resulting white precipitate was collected by vacuum filtration affording isomerically pure 1 as a white solid. (7.0 g, 27 mmol, 23% yield). 1H NMR (400 MHz, D2O) δ 4.28 (d, J=8.0 Hz, 1H), 3.06 (m, 3H), 2.18 (m, 1H), 1.96 (m, 2H), 1.78 (m, 3H), 1.62 (m, 2H), 1.21 (s, 3H), 1.05 (m, 5H), 0.84 (d, J=12 Hz, 2H), 0.71 (s, 2H), 0.62 (s, 3H).

  • Example 2 Synthesis Of Series A Compounds: (2R)-1-(2-Cyclopentylamino-acetyl)-boroPro-OH (4)
  • Step 1: (2R)-1-(2-Chloroacetyl)-boroPro-(1S,2S,3R,5S)-pinanediol ester (3A).

  • To a solution of 2 (36.7 g, 129.3 mmol) dissolved in dry CH2Cl2 (200 mL) cooled to 0° C. was added chloroacetyl chloride (12.34 mL, 155.2 mmol) under a blanket of N2. To this was slowly dripped 4-methylmorpholine (42.4 mL, 182 mmol) to give an almost clear light orange solution that was warmed to room temp. After 30 minutes the solution was cooled again to 0° C. and 200 mL of a 0.2N solution of HCl was added and the organic layers separated, dried and concentrated to give a dark red oil that was a single spot by TLC (2:1 hex/EtOAc, Rf=0.22, made visual via I2 and/or PMA stain) and was used in the next step without further purification. 1H NMR (400 MHz, CDCl3) δ0.80 (s, 3H), 1.25 (m, 1H), 1.26 (s, 3H), 1.42 (s, 3H), 1.75-1.96 (m, 4H), 1.98-2.10 (m, 3H), 2.12-2.20 (m, 1H), 2.29-2.35 (m, 1H), 3.12-3.16 (m, 1H), 3.47-3.53 (m, 1H), 3.58-3.63 (m, 1H), 3.97-4.05 (q, 2H), 4.30-4.32 (d, 1H).

  • Step 2: (2R)-1-(2-Cyclopentylamino-acetyl)-boroPro-(1S,2S,3R,5S)-pinanediol ester (3B).

  • Compound 3A was dissolved in dry THF (˜150 mL) followed by addition of K2CO3 (35 g) and cooled to 0° C. before addition of cyclopentylamine (21.93 g, 258 mmol). The reaction mixture was then allowed to warm to room temperature and stirred overnight. TLC indicated all starting material was consumed. The mixture was filtered through a celite and silica pad, washed with 5% MeOH in CH2Cl2 (200 mL) and concentrated to yield a sticky, light orange solid. The red sticky solid was dissolved in CH2Cl2 (150 mL) followed by addition of Et2O (˜200 mL) and the solution was stirred overnight. The resulting milky white solution was then filtered and the precipitate was washed with cold EtOAc (2×60 mL) and hexane (2×50 mL) and dried to give 3B (28.92 g, 120.5 mmol) as a fluffy white solid. The dark red mother liquor filtrate was concentrated and subjected to the previous recrystallization conditions to obtain a second crop of 3B (6.17 g, 25.7 mmol) for a combined overall yield of 3B (35.09 g, 93.8 mmol) of 73% yield. Rf=0.45 (10% MeOH in CH2Cl2). 1H NMR (400 MHz, CDCl3) δ 4.18 (d, 1H), 3.95 (d, J=16 Hz, 1H), 3.6 (d, J=16 Hz, 1H), 3.46 (m, 3H), 2.74 (m, 1H), 2.36 (m, 1H), 2.16 (m, 2H), 2.04 (m, 4H), 1.90 (s, 1H), 1.74 (m, 6H), 1.61 (s, 1H), 1.46 (m, 2H), 1.34 (s, 3H), 1.30 (s, 3H), 0.88 (s, 3H).

  • Step 3: (2R)-1-(2-Cyclopentylamino-acetyl)-boroPro-OH (4)

  • To a solution of 3B (40.59 g, 108.5 mmol) in H2O (200 mL, adjusted to pH 2 by addition of 2 N HCl) was added hexane (200 mL) and phenyl boronic acid (13.37 g, 109.5 mmol) and the bi-phasic mixture was stirred vigorously. The hexane layer was periodically removed and replaced with fresh hexane 6 times over a 24-hour period. The aqueous layer was separated and applied to a Dowex 50-X2-100 ion exchange column (H+ form) and eluted with water until the eluate was neutral. Elution with aqueous ammonium hydroxide (2 wt %) followed by lyophilization of the appropriate fractions yielded 4 (23.91 g, 99.6 mmol) as a white crystalline solid in a 92% yield. 4-TFA salt 1H NMR (400 MHz, D2O) δ 3.88 (dd, J=8.0 Hz, 2H), 3.54 (m, 1H), 3.42 (m, 1H), 3.28 (m, 1H), 2.96 (m, 1H), 1.96 (m, 4H), 1.85 (m, 2H), 1.63 (m, 7H); MS (ESI) m/z 223 (M+H—H2O)+.

  • Example 3 Synthesis of 1-(2-Cyclopropylamino-acetyl)-pyrrolidine-(2R)-boronic acid (A2)
  • The title compound was prepared according to the procedure of Example 2 using appropriate starting materials. 1H NMR (D2O) δ 4.08 (dd, J=12 Hz, 2H), 3.54 (m, 1H), 3.38 (m, 1H), 3.07 (m, 1H), 2.26 (m, 1H), 2.09 (m, 2H), 1.94 (m, 1H), 1.71 (m, 1H), 0.88 (s, 4H); MS (ESI) m/z 195.13 (MH+—H2O).

  • Example 4 Synthesis of 1-[2-(3-Hydroxy-adamantan-1-ylamino)-acetyl]-pyrrolidine-(2R)-boronic acid (A3)
  • The title compound was prepared according to the procedure of Example 2 using appropriate starting materials. 1H NMR (D2O) δ 3.94 (d, J=8 Hz, 2H), 3.54 (m, 1H), 3.40 (m, 1H), 3.09 (m, 1H), 2.41 (s, 2H), 2.09 (m, 3H), 1.93 (m, 2H), 1.87 (m, 7H), 1.71 (m, 6H), 1.56 (m, 2H); MS (ESI) m/z 305.21 (MH+—H2O).

  • Example 5 Synthesis of 1-(5R-Phenyl-pyrrolidine-2S-carbonyl)-pyrrolidine-(2R)-boronic acid (6)
  • Step 1: N-Boc-5-phenylPro-(2R)-boroPro-(1S,2S,3R,5S)-pinanediol ester (5):

  • To an ice-cooled (0° C.) solution of N-Boc-5-phenyl-Pro-OH (0.84 mmol) in dry CH2Cl2 was added EDAC (174 mg, 0.91 mmol) and HOBt (105 mg, 0.775 mmol). The reaction was stirred at 0° C. for 15-minutes and then 2 (200 mg, 0.7 mmol) and N-methyl morphiline (0.25 mL, 2.1 mmol) was added and the reaction was slowly warmed to room temperature and the reaction continued for 8 hours. The coupling reaction was then quenched with the addition of NaHCO3 (10 mL), extracted into EtOAc (2×15 mL), washed with brine (15 mL), dried over Na2SO4, concentrated and further purified via column chromatography (silica gel, eluted with a gradient of EtOAc in hexanes, 30-50%) to afford 5 (320 mg, 0.62 mmol, 88%) as an off-white solid.

  • Step 2: 1-(5R-Phenyl-pyrrolidine-2S-carbonyl)-pyrrolidine-(2R)-boronic acid (6):

  • An ice-cooled solution of 5 (320 mg, 0.62 mmol) in dry ether was saturated with dry HCl (g) and allowed to stir for 1-hour. The solution was then concentrated under vacuum to afford a sticky white solid that was taken up in H2O (10 mL, adjusted to pH 2 by addition of 2 N HCl) and hexane (10 mL) and phenyl boronic acid (74 mg, 0.62 mmol) and the bi-phasic mixture was stirred vigorously. The hexane layer was periodically removed and replaced with fresh hexane 6 times over a 24-hour period. The aqueous layer was separated and applied to a Dowex 50-X2-100 ion exchange column (H+ form) and eluted with water until the eluate was neutral. Elution was continued with aqueous ammonium hydroxide (2 wt %) and the appropriate fractions were lyophilized to afford the free boronic acid B1 (76 mg, 0.26 mmol) as an amorphous white solid. 1H NMR (D2O) δ 7.46 (m, 5H), 3.65 (m, 1H), 3.44 (m, 1H), 3.04 (m, 1H), 2.54 (m, 1H), 2.38 (m, 2H), 2.20 (m, 1H), 2.06 (m, 2H), 1.86 (m, 1H), 1.66 (m, 1H); MS (ESI) m/z 271 (MH+—H2O).

  • Example 6 Synthesis of 1-(Piperidine-2S-carbonyl)-pyrrolidin-(2R)-boronic acid (B2)
  • The title compound was prepared according to the procedure of Example 5 using appropriate starting materials. 1H NMR (D2O) δ 4.07 (m, 1H), 3.61 (m, 1H), 3.34 (m, 2H), 2.94 (m, 2H), 2.16 (m, 1H), 2.03 (m, 2H), 1.87 (m, 3H), 1.56 (m, 4H); MS (ESI) m/z 209 (MH+—H2O).

  • Example 7 Synthesis of 1-(2,3-Dihydro-1H-indole-2S-carbonyl)-pyrrolidine-(2R)-boronic acid (B3)
  • The title compound was prepared according to the procedure of Example 5 using appropriate starting materials. 1H NMR (D2O) δ 4.54 (m, 1H), 3.73 (m, 1H), 3.58 (m, 1H), 3.34 (m, 1H), 2.48 (m, 1H), 2.37 (m, 1H), 2.06 (m, 3H), 1.83 (m, 3H), 1.58 (m, 4H), 1.32 (m, 4H); MS (ESI) m/z 249 (MH+—H2O).

  • Example 8 Synthesis of 1-(4S-Phenyl-pyrrolidine-2S-carbonyl)-pyrrolidine-(2R)-boronic acid (B4)
  • The title compound was prepared according to the procedure of Example 5 using appropriate starting materials. 1H NMR (D2O) δ 7.34 (d, J=13 Hz, 2H), 7.27 (m, 3H), 4.79 (m, 1H), 3.83 (m, 1H), 3.59 (m, 1H), 3.34 (m, 2H), 3.06 (m, 1H), 2.53 (m, 2H), 2.08 (m, 2H) 1.77 (m, 1H), 1.64 (m, 1H); MS (ESI) m/z 271 (MH+—H2O).

  • Example 9 Synthesis of Series C Compounds: (2R)-1-[(2S,4S)-4-Amino-pyrrolidine-2-carbonyl]-boroPro-OH (15)
  • Step 1: (2R)-1-[(2S,4S)-1-tert-Butoxycarbonyl-4-benzyloxycarbonylamino-pyrrolidine-2-carbonyl]-boroPro-(1S,2S,3R,5S)-pinanediol ester (13)

  • The protocol described for the synthesis of 11 was followed employing (2S,4S)-Fmoc-4-amino-1-boc-pyrrolidine-2-carboxylic acid (628 mg, 2.2 mmol) in place of azetidine-1,2-dicarboxylic acid 1-tert-butyl ester. Compound 13 was obtained as a clear colorless oil that was used in the next step without further purification.

  • Step 2: (2R)-1-[(2S,4S)-1-tert-Butoxycarbonyl-4-amino-pyrrolidine-2-carbonyl]-boroPro-(1S,2S,3R,5S)-pinanediol ester (14)

  • To a solution of 13 dissolved in DCM (10 ml) was added diethyl amine (5 ml) at once and the resulting colorless solution was stirred overnight at room temperature. The reaction was evaporated to dryness and additional DCM was added followed by evaporation once again to dryness. The resulting oil was purified by column chromatography (silica gel, eluted with a gradient of 2.5 to 5% MeOH in DCM, made visible by 12 and/or PMA) to give 14 as a clear colorless oil in a 48% yield over 2 steps.

  • Step 3: (2R)-1-[(2S,4S)-4-Amino-pyrrolidine-2-carbonyl]-boroPro-OH (15)

  • The protocol described above for the N-Boc deprotection and pinanediol ester hydrolysis in the synthesis of compound 12 was applied to 14. Compound 15 was obtained as a white solid. 15.TFA salt 1H-NMR (500 MHz, D2O) δ 4.42 (dd, 1H), 3.87 (m, 1H), 3.5 (dd, 1H), 3.28 (m, 2H), 3.07 (m, 1H), 2.73 (m, 1H), 2.64 (m, 1H), 1.86 (m, 1H), 1.72 (br m, 2H), 1.55 (br m, 2H), 1.34 (m, 2H). MS m/z (rel intensity) 228 (M+1) (55), 210 (M+1—H2O) (95).

  • Example 10 Synthesis of Series D Compounds: (2R)-1-[(2S)-4-Methanesulfonyl-piperazine-2-carbonyl]-boroPro-OH (19)
  • Step 1: (2R)-1-[(2S)-1-tert-Butoxycarbonyl-4-benzyloxycarbonyl-piperazine-2-carbonyl]-boroPro-(1S,2S,3R,5S)-pinanediol ester (16)

  • The protocol described above for the synthesis of 11 was followed employing (2S)—N-1-Boc-N-4-Cbz-2-piperazine carboxylic acid (1 g, 2.6 mmol) in place of azetidine-1,2-dicarboxylic acid 1-tert-butyl ester. Compound 16 (690 mg, 1.5 mmol) was obtained in 57% yield as an oil after silica gel column chormatography. MS m/z (rel intensity) 618 (M+23)+(17), 596 (M+1)+(100), 496 (38).

  • Step 2: (2R)-1-[(2S)-1-tert-Butoxycarbonyl-piperazine-2-carbonyl]-boroPro-(1S,2S,3R,5S)-pinanediol ester (17)

  • To a solution of compound 16 (314 mg, 0.53 mmol) in MeOH (6 mL) was added Pd/C (40 mg). The mixture was stirred under a H2 atmosphere for 2 h. Upon completion of the reaction, it was filtered through a plough of Celite. The solvents were removed under reduced pressure and the oily residue used in the next step without further purification. MS m/z (rel intensity) 462 (M+1)+(100), 406 (12), 362 (11).

  • Step 3: (2R)-1-[(2S)-1-tert-Butoxycarbonyl-4-methanesulfonyl-piperazine-2-carbonyl]-boroPro-(1S,2S,3R,5S)-pinanediol ester (18)

  • To a solution of compound 17 (214 mg, 0.46 mmol) in CH2Cl2 (5 mL) cooled to 0° C. was sequentially added N-methylmorpholine (204 μL, 1.9 mmol) and methanesulfonyl chloride (72 μL, 0.93 mmol). The reaction mixture was allowed to warm up to room temperature and stir for 3 hours. The reaction was then diluted with CH2Cl2 (6 ml) and water (6 mL). The organic phase was isolated and dried over MgSO4. After filtration, solvents were removed under reduced pressure. The oily residue was purified by column chromatography (silica gel) using a mixture of EtOAc/Hexanes as eluent. Compound 18 (112 mg, 0.21 mmol) was obtained in 45% yield. MS m/z (rel intensity) 562 (M+23)+(14), 540 (M+1) (100), 388 (75).

  • Step 4: (2R)-1-[(2S)-4-Methanesulfonyl-piperazine-2-carbonyl]-boroPro-OH (19)

  • The protocol described above for the N-Boc deprotection and pinanediol ester hydrolysis in the synthesis of compound 12 was applied to 18 (112 mg, 0.21 mg). Compound 19 (32 mg, 0.11 mmol) was obtained in 53% yield. 19.TFA salt 1H-NMR (500 MHz, D2O) δ 4.32 (dd, J=11.0, 3.5 Hz, 1H), 4.05 (m, 1H), 3.93 (m, 1H), 3.77 (m, 1H), 3.60 (ddd, J=10.5, 8.0, 2.5 Hz, 1H), 3.47 (ddd, J=12.5, 3.0, 3.0, 1H), 3.35 (m, 2H), 3.16 (m, 2H), 3.02 (dd, J=13.8, 11.3 Hz, 1H), 2.93 (s, 3H), 1.96 (m, 2H), 1.81 (m, 1H), 1.72 (m, 1H), 1.56 (m, 1H). MS m/z (rel intensity) 575 (12), 328 (M+23)+(6), 288 (M−17) (100).

  • Example 11
  • Using the procedures illustrated above, the following compounds in the Table were prepared and characterized using liquid chromatography-mass spectroscopy (LC-MS).

    TABLE
    Compound
    No. Series Structure LC-MS
    22 A

    Figure US20070185061A1-20070809-C00014

    255 (M + 1)(13), 237 (100)
    23 A

    Figure US20070185061A1-20070809-C00015

    227 (M + 1)(10), 209 (100)
    24 A

    Figure US20070185061A1-20070809-C00016

    229 (M + 1)(18), 211 (100)
    25 A

    Figure US20070185061A1-20070809-C00017

    215 (M + 1)(12), 197 (100)
    26 A

    Figure US20070185061A1-20070809-C00018

    263 (M + 1)(5), 245 (100)
    27 A

    Figure US20070185061A1-20070809-C00019

    277 (M + 1)(4), 259 (100)
    28 A

    Figure US20070185061A1-20070809-C00020

    283 (M + 1)(22), 265 (100)
    29 A

    Figure US20070185061A1-20070809-C00021

    277 (M + 1)(5), 259 (100)
    30 A

    Figure US20070185061A1-20070809-C00022

    283 (M + 1)(21), 265 (100)
    31 A

    Figure US20070185061A1-20070809-C00023

    269 (M + 1)(16), 251 (100)
    43 A

    Figure US20070185061A1-20070809-C00024

    271 (M + 1)(100), 253 (16)
    44 A

    Figure US20070185061A1-20070809-C00025

    270 (M + 1)(100), 252 (17)
    47 A

    Figure US20070185061A1-20070809-C00026

    721 (10), 361 (M + 1)(100)
    48 A

    Figure US20070185061A1-20070809-C00027

    285 (M + 1)(100), 267 (12)
    95 B

    Figure US20070185061A1-20070809-C00028

    201 (M + 1)(100), 183 (22)
    96 B

    Figure US20070185061A1-20070809-C00029

    255 (M + 1)(100), 237 (100)
    97 B

    Figure US20070185061A1-20070809-C00030

    187 (M + 1)(5), 169 (100)
    98 B

    Figure US20070185061A1-20070809-C00031

    243(M + 1)(5), 225 (71)
    99 B

    Figure US20070185061A1-20070809-C00032

    449(5), 243(M + 1)(7), 225 (100)
    100 B

    Figure US20070185061A1-20070809-C00033

    223(M + 23)(3), 183(48)
    101 B

    Figure US20070185061A1-20070809-C00034

    223(M + 23)(4), 183(10)
    102 C

    Figure US20070185061A1-20070809-C00035

    228(M + 1)(55), 210 (M − 17)(95)
    103 C

    Figure US20070185061A1-20070809-C00036

    210(M − 17)major, 228(M + 1)minor
    104 C

    Figure US20070185061A1-20070809-C00037

    210(M − 17)major, 228(M + 1)minor
    105 D

    Figure US20070185061A1-20070809-C00038

    575(12), 328 (M + 23)(6), 288 (100)
    106 D

    Figure US20070185061A1-20070809-C00039

    452 (M + 1)(3), 434 (100)
    107 D

    Figure US20070185061A1-20070809-C00040

    368 (M + 1)(2), 350 (100)
    108 D

    Figure US20070185061A1-20070809-C00041

    428 (M − 17)(100)
    109 D

    Figure US20070185061A1-20070809-C00042

    386 (M − 17)(100)
    110 D

    Figure US20070185061A1-20070809-C00043

    436 (M + 1)(10), 418 (100)
    111 D

    Figure US20070185061A1-20070809-C00044

    436 (M + 1)(4), 418 (100)
    112 D

    Figure US20070185061A1-20070809-C00045

    627 (25), 332 (M + 1)(10), 314 (100)
    113 D

    Figure US20070185061A1-20070809-C00046

    368(M + 1)(38), 350 (100)
    114 D

    Figure US20070185061A1-20070809-C00047

    350 (M − 17)(100) 332 (22)
    115 D

    Figure US20070185061A1-20070809-C00048

    332(M + 1)(4), 314 (93)
    116 D

    Figure US20070185061A1-20070809-C00049

    338(M + 1)(3), 320 (98)
    117 D

    Figure US20070185061A1-20070809-C00050

    332(M + 1)(27), 314 (100)
    118 D

    Figure US20070185061A1-20070809-C00051

    338 (M + 1)(21), 320 (100)
    130 G

    Figure US20070185061A1-20070809-C00052

    623 (28), 312 (M + 1) (100), 294 (30)
    131 G

    Figure US20070185061A1-20070809-C00053

    819 (20), 410 (100)
    132 G

    Figure US20070185061A1-20070809-C00054

    374 (M + 1)(100), 356 (67)
    133 G

    Figure US20070185061A1-20070809-C00055

    759 (57), 380 (M + 1)(100), 362 (64)
  • While the invention has been described and exemplified in sufficient detail for those skilled in this art to make and use it, various alternatives, modifications, and improvements will be apparent to those skilled in the art without departing from the spirit and scope of the claims.

  • All patents and publications are herein incorporated by reference to the same extent as if each individual publication was specifically and individually indicated to be incorporated by reference.

  • The terms and expressions which have been employed are used as terms of description and not of limitation, and there is no intention that in the use of such terms and expressions of excluding any equivalents of the features shown and described or portions thereof, but it is recognized that various modifications are possible within the scope of the invention claimed. Thus, it should be understood that although the present invention has been specifically disclosed by preferred embodiments and optional features, modification and variation of the concepts herein disclosed may be resorted to by those skilled in the art, and that such modifications and variations are considered to be within the scope of this invention as defined by the appended claims.

  • In addition, where features or aspects of the invention are described in terms of Markush groups, those skilled in the art will recognize that the invention is also thereby described in terms of any individual member or subgroup of members of the Markush group. For example, if X is described as selected from the group consisting of bromine, chlorine, and iodine, claims for X being bromine and claims for X being bromine and chlorine are fully described.

Claims (3)

1. A pyrrolidine compound of formula I:

Figure US20070185061A1-20070809-C00056

including all enantiomers, diastereoisomers, solvates, hydrates and pharmaceutically acceptable salts thereof, wherein:

n is 1 to 3;

X is CH2; S; O; CF2 or C(CH3)2;

Z is H; halogen; hydroxyl; (C1-6)alkoxy; (C1-12)alkyl; (C3-12)cycloalkyl; phenyl; or heteroaryl; where the phenyl and heteroaryl groups are optionally mono- or independently plurisubstituted with R7;

R7 is halogen; (C1-10)alkyl; (C1-10)alkoxy; (C1-10)alkylamino; (C1-10) dialkylamino; benzyl; benzyloxy; hydroxyl(C1-6)alkyl; hydroxymethyl; nitro; trifluoromethyl; trifluoromethoxy; trifluoromethylthio; N-hydroxyamino; cyano; carboxy; acetamido; hydroxy; sulfamoyl; sulfonamido; or carbamoyl;

optionally, X together with an adjacent ring carbon and Z form a fused cyclopropyl; and

optionally, one of the bonds in the ring containing X is a double bond;

R1 and R2 independently or together are hydrogen; a boronic acid protecting group; or a group capable of being hydrolyzed to a hydroxyl group in an aqueous solution at physiological pH or in biological fluids; and

CRiRii may be present or absent, and

when CRiRii is present, then

Ri, Rii, R3, R4 and R5 are selected from (aa) or (bb):

(aa) Ri, Rii, R3 and R4 are hydrogen; and R5 is hydrogen, (C1-12)alkyl or (C3-12) cycloalkyl;

(bb) Ri, RiiR3, R4 and R5 are independently hydrogen; alkyl; alkenyl; alkynyl; cycloalkyl; cycloalkylalkyl; bicycloalkyl; tricycloalkyl; alkylcycloalkyl; hydroxyalkyl; hydroxyalkylcycloalkyl; hydroxycycloalkyl; hydroxybicycloalkyl; hydroxytricycloalkyl; bicycloalkylalkyl; alkylbicycloalkyl; alkylthioalkyl; arylalkylthioalkyl; cycloalkenyl; aryl, aralkyl; heteroaryl; heteroarylalkyl; cycloheteroalkyl or cycloheteroalkylalkyl; all optionally mono- or independently plurisubstituted with halogen, alkyl, polyhaloalkyl, alkoxy, haloalkoxy, polyhaloalkoxy, alkoxycarbonyl, alkenyl, alkynyl, cycloalkyl, cycloalkylalkyl, polycycloalkyl, heteroarylamino, arylamino, cycloheteroalkyl, cycloheteroalkylalkyl, hydroxy, hydroxyalkyl, nitro, cyano, amino, substituted amino, alkylamino, dialkylamino, thiol, alkylthio, alkylcarbonyl, acyl, alkoxycarbonyl, aminocarbonyl, alkynylamino-carbonyl, alkylaminocarbonyl, alkenylaminocarbonyl, alkylcarbonyloxy, alkylcarbonylamino, arylcarbonylamino, alkylsulfonylamino, alkylaminocarbonyl-amino, alkoxycarbonylamino, alkylsulfonyl, aminosulfinyl, aminosulfonyl, alkylsulfinyl, sulfonamido or sulfonyl,

or alternatively,

when CRiRii is absent, then R3, R4 and R5 are selected from (cc), (dd) or (ee):

(cc) R3 and R4 are hydrogen; and

R5 is

a) hydrogen, provided that R5 is not hydrogen when n is 1, X is CH2, and Z is H;

b) (C1-12)alkyl; (C2-12)alkenyl; (C2-12)alkynyl; (C3-12)cycloalkyl; or (C3-12)cycloalkenyl; where the alkyl, alkenyl, alkynyl, cycloalkyl and cycloalkenyl groups are optionally mono- or independently plurisubstituted with R6, and where the alkyl, alkenyl, alkynyl portions include linear or branched chains and may include cyclic portions;

R6 is (C1-6)alkyl; (C1-6)alkoxy; cycloalkyl; carboxy; acetamido; cyano; nitro; halogen; hydroxy; hydroxy(C1-6)alkyl; hydroxymethyl; trifluoromethyl; trifluoromethoxy; sulfamoyl; sulfonamido; carbamoyl; aryl; heteroaryl; where the aryl and heteroaryl groups are optionally mono- or independently plurisubstituted with R7; amino, where the amino group is optionally mono- or independently plurisubstituted with R8; —SOR8; —SO2R8; —COR8; —CO2R8, —CONHR8; —CON(R8)2; —OR8; or —S—R8;

R7 is halogen; (C1-10)alkyl; (C1-10)alkoxy; (C1-10)alkylamino; (C1-10) dialkylamino; benzyl; benzyloxy; hydroxyl(C1-6)alkyl; hydroxymethyl; nitro; trifluoromethyl; trifluoromethoxy; trifluoromethylthio; N-hydroxyamino; cyano; carboxy; acetamido; hydroxy; sulfamoyl; sulfonamido; or carbamoyl;

R8 is (C1-10)alkyl; (C2-10)alkenyl; (C2-10)alkynyl; (C3-10)cycloalkyl; (C5-10)cycloalkenyl; benzyl; phenethyl; aryl; or heteroaryl; where the alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl groups are optionally mono- or independently plurisubstituted with aryl or heteroaryl where the aryl and heteroaryl groups are optionally mono- or independently plurisubstituted with R7;

c) aryl optionally fused to a (C3-10)cycloalkyl; or heteroaryl optionally fused to a (C3-10)cycloalkyl; where the aryl and heteroaryl groups are optionally mono- or independently plurisubstituted with R7;

d) indanyl; 1,2,3,4-tetrahydronaphthyl; (CH2)j adamantyl in which j is 0-3; or a [2.2.1] or [3.1.1] bicyclic carbocyclic moiety, including (4-pentylbicyclo[2.2.2]oct-1-yl)amine; where the indanyl, 1,2,3,4-tetrahydronaphthyl, (CH2)j adamantyl, and [2.2.1] or [3.1.1] bicyclic carbocyclic moieties are optionally mono- or independently plurisubstituted with hydroxy, (C1-8)alkyl, (C1-8)alkoxy, (C1-8)alkanoyloxy, or R9R10N—CO—O—, where R9 and R10 are independently (C1-8)alkyl, or phenyl, where the alkyl and phenyl groups are optionally mono- or independently plurisubstituted with (C1-8)alkyl, (C1-8)alkoxy, halogen, or trifluoromethyl, or R9 and R10 together are (C3-6)alkylene;

e) R11(CH2)p— where R11 is 2-oxopyrrolidinyl; (C1-6)alkoxy; phenyl; phenoxy; (C1-8)cycloalkyl; [3.3.3] bicyclic carbocyclic moiety; pyridinyl; naphthyl; cyclohexenyl; or adamantyl; where the 2-oxopyrrolidinyl, (C1-6)alkoxy, phenyl, pyridinyl, and naphthyl groups are optionally mono- or independently di- or independently trisubstituted with R12; where the phenoxy group is optionally mono- or independently disubstituted with (C1-4)alkyl, (C1-4)alkoxy, or halogen; and where the [3.3.3] bicyclic carbocyclic moiety is optionally mono- or independently plurisubstituted with (C1-8)alkyl; and p is 0 to 3;

R12 is halogen; trifluoromethyl; cyano; nitro; (C1-6)alkyl; (C1-6)alkoxy; cycloalkyl; carboxy; acetamido; hydroxy; hydroxy(C1-6)alkyl; hydroxymethyl; trifluoromethoxy; sulfamoyl; carbamoyl; sulfonamido; alkylsufonyl; phenylsulfonyl; aryl; heteroaryl; where the aryl and heteroaryl groups are optionally mono- or independently plurisubstituted with R7;

f) (R3)2CH(CH2)q—, where R13 is phenyl; in which the phenyl groups are independently optionally mono- or independently disubstituted with R2; and q is 0 to 3;

g) a group of the formula:

Figure US20070185061A1-20070809-C00057

where R14 and R15 are independently hydrogen; (C1-8)alkyl; (C1-6)alkylcarbonyl; (C3-12)cycloalkyl ring; (C3-12)cycloalkenyl ring; benzyl; benzoyl; pyridine; pyrimidine; phenyl; phenylamino-carbonyl; alkylsulfonyl; or phenylsulfonyl; where the cycloalkyl ring is optionally substituted with hydroxy(C1-6)alkyl, and where the benzyl, benzoyl, pyridine, pyrimidine, phenyl, phenylaminocarbonyl, alkylsulfonyl, and phenylsulfonyl groups are optionally mono- or independently di-substituted with R12; or R14 and R15 together form a (C3-12)cycloalkyl ring; and r is 2 to 6;

h) a group of the formula:

Figure US20070185061A1-20070809-C00058

where R16 and R17 are each independently hydrogen; (C1-8)alkyl; (C1-6)alkylcarbonyl; di-(C1-6)alkylaminocarbonyl; benzyl; benzoyl; pyridine; pyrimidine; phenyl; phenylaminocarbonyl; alkylsulfonyl; or phenylsulfonyl; where the benzyl, benzoyl, pyridine, pyrimidine, phenyl, phenylaminocarbonyl, alkylsulfonyl, and phenylsulfonyl groups are optionally mono- or independently di-substituted with R12; or R16 and R17 together form a (C3-12)cycloalkyl ring; and s is 1 to 6;

i) a group of the formula:

Figure US20070185061A1-20070809-C00059

wherein R18 and R19 are independently hydrogen; (C1-8)alkyl; (C1-6)alkylcarbonyl; di-(C1-6)alkylaminocarbonyl; benzyl; benzothiazole; benzoyl; pyridine; pyrimidine; phenyl; phenylaminocarbonyl; alkylsulfonyl; or phenylsulfonyl; where the benzyl, benzoyl, benzothiazole, pyridine, pyrimidine, phenyl, phenylaminocarbonyl, alkylsulfonyl, and phenylsulfonyl groups are optionally mono- or independently di-substituted with R12; or wherein R18 and R19 together with the N form an (N, C3-12) heterocycloalkyl ring containing the nitrogen atom; and each t is independently 0 to 6; and u is 0 to 3;

j) a group of the formula:

where the phenyl group is optionally mono- or independently plurisubstituted with R12;

; or

k) a group of the formula:

Figure US20070185061A1-20070809-C00060

where R21 is hydrogen; (C1-8)alkyl; benzyl; or phenyl; in which the benzyl and phenyl groups are optionally mono- or independently di-substituted on the ring with R12; each t is independently 0 to 6; and u is 0 to 3; and,

wherein a bond containing a wavy line signifies a point of attachment;

(dd) R3, R4 and R5 are independently hydrogen; alkyl; alkenyl; alkynyl; cycloalkyl; cycloalkylalkyl; bicycloalkyl; tricycloalkyl; alkylcycloalkyl; hydroxyalkyl; hydroxyalkylcycloalkyl; hydroxycycloalkyl; hydroxybicycloalkyl; hydroxytricycloalkyl; bicycloalkylalkyl; alkylbicycloalkyl; alkylthioalkyl; arylalkylthioalkyl; cycloalkenyl; aryl or aralkyl; all optionally mono- or independently plurisubstituted with halogen, alkyl, polyhaloalkyl, alkoxy, haloalkoxy, polyhaloalkoxy, alkoxycarbonyl, alkenyl, alkynyl, cycloalkyl, cycloalkylalkyl, polycycloalkyl, arylamino, hydroxy, hydroxyalkyl, nitro, cyano, amino, substituted amino, alkylamino, dialkylamino, thiol, alkylthio, alkylcarbonyl, acyl, alkoxycarbonyl, aminocarbonyl, alkynylamino-carbonyl, alkylaminocarbonyl, alkenylaminocarbonyl, alkylcarbonyloxy, alkylcarbonylamino, arylcarbonylamino, alkylsulfonylamino, alkylaminocarbonyl-amino, alkoxycarbonylamino, alkylsulfonyl, aminosulfinyl, aminosulfonyl, alkylsulfinyl, sulfonamido or sulfonyl, provided that when n is 1, X is CH2, the ring containing X is saturated, and Z, R3 and R5 are H, R4 is not a side chain of a naturally occurring α-amino acid, and provided that when n is 1, X is CH2, the ring containing X is saturated, and Z and R5 are H, R3 and R4 are not both methyl; or,

(ee) R3 is hydrogen, and R4 and R5 together with the atoms to which they are attached form a 4 to 8 membered heterocyclic ring of 3 to 7 carbons and 1 nitrogen,

wherein the heterocyclic ring carbon atoms other than the carbon connected to N and R4 have the formula —(CR22R23)m— wherein m is 2 to 6, and R22 and R23 are independently hydrogen, hydroxyl, alkoxy, alkyl, alkenyl, alkynyl, cycloalkyl, halo, amino, substituted amino, cycloalkylalkyl, cycloalkenyl, aryl, arylalkyl, heteroaryl, heteroarylalkyl, cycloheteroalkyl, cycloheteroalkylalkyl, alkylcarbonylamino, arylcarbonylamino, alkoxycarbonylamino, aryloxycarbonylamino, alkoxycarbonyl, aryloxycarbonyl, or alkylaminocarbonylamino; and, optionally the heterocyclic ring has an aryl, heteroaryl or a 3 to 7 membered cycloalkyl ring fused thereto, provided that when n is 1, X is CH2, the ring containing X is saturated, and Z and R3 are H, then R4 and R5 together are not —(CH2)2— or —(CH2)3—.

2. A linear alkyl pyrrolidine compound of formula I according to

claim 1

wherein CRi Rii is absent, R3, R4 and R5 are as given in clauses (cc), (dd) and (ee), and the linear alkyl pyrrolidine compound has formula II:

Figure US20070185061A1-20070809-C00061

3. A linear beta pyrrolidine compound of formula I according to

claim 1

wherein CRi Rii is present, R3, R4 and R5 are as given in clauses (aa) and (bb), and the linear beta pyrrolidine compound has formula III:

Figure US20070185061A1-20070809-C00062

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