Asymmetries in the nucleosome core particle at 2.5 A resolution - PubMed
Asymmetries in the nucleosome core particle at 2.5 A resolution
J M Harp et al. Acta Crystallogr D Biol Crystallogr. 2000 Dec.
Abstract
The 2.5 A X-ray crystal structure of the nucleosome core particle presented here provides significant additions to the understanding of the nucleosome, the fundamental unit of chromatin structure. Extensions are made to the structure of the N-terminal histone tails and details are provided on hydration and ion binding. The structure is composed of twofold symmetric molecules, native chicken histone octamer cores and the DNA palindrome, which were expected to form a perfectly twofold symmetric nucleosome core particle. In fact, the result is asymmetric owing to the binding of the DNA to the protein surface and to the packing of the particles in the crystal lattice. An analysis is made of the asymmetries by comparisons both within the nucleosome core particle and to the structure of the histone octamer core of the nucleosome.
Similar articles
-
Crystal structure of the nucleosome core particle at 2.8 A resolution.
Luger K, Mäder AW, Richmond RK, Sargent DF, Richmond TJ. Luger K, et al. Nature. 1997 Sep 18;389(6648):251-60. doi: 10.1038/38444. Nature. 1997. PMID: 9305837
-
Histone chaperones and nucleosome assembly.
Akey CW, Luger K. Akey CW, et al. Curr Opin Struct Biol. 2003 Feb;13(1):6-14. doi: 10.1016/s0959-440x(03)00002-2. Curr Opin Struct Biol. 2003. PMID: 12581654 Review.
-
DNA binding within the nucleosome core.
Luger K, Richmond TJ. Luger K, et al. Curr Opin Struct Biol. 1998 Feb;8(1):33-40. doi: 10.1016/s0959-440x(98)80007-9. Curr Opin Struct Biol. 1998. PMID: 9519294 Review.
-
Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution.
Davey CA, Sargent DF, Luger K, Maeder AW, Richmond TJ. Davey CA, et al. J Mol Biol. 2002 Jun 21;319(5):1097-113. doi: 10.1016/S0022-2836(02)00386-8. J Mol Biol. 2002. PMID: 12079350
-
Twists and turns of the nucleosome: tails without ends.
Dutnall RN, Ramakrishnan V. Dutnall RN, et al. Structure. 1997 Oct 15;5(10):1255-9. doi: 10.1016/s0969-2126(97)00276-1. Structure. 1997. PMID: 9351811 Review.
Cited by
-
Lan L, Nakajima S, Kapetanaki MG, Hsieh CL, Fagerburg M, Thickman K, Rodriguez-Collazo P, Leuba SH, Levine AS, Rapić-Otrin V. Lan L, et al. J Biol Chem. 2012 Apr 6;287(15):12036-49. doi: 10.1074/jbc.M111.307058. Epub 2012 Feb 10. J Biol Chem. 2012. PMID: 22334663 Free PMC article.
-
Binding of chromium(VI) to histones: implications for chromium(VI)-induced genotoxicity.
Levina A, Harris HH, Lay PA. Levina A, et al. J Biol Inorg Chem. 2006 Mar;11(2):225-34. doi: 10.1007/s00775-005-0068-3. Epub 2005 Dec 15. J Biol Inorg Chem. 2006. PMID: 16362419
-
Efremov AK, Yan J. Efremov AK, et al. Nucleic Acids Res. 2018 Jul 27;46(13):6504-6527. doi: 10.1093/nar/gky478. Nucleic Acids Res. 2018. PMID: 29878241 Free PMC article.
-
Cui F, Zhurkin VB. Cui F, et al. Nucleic Acids Res. 2009 May;37(9):2818-29. doi: 10.1093/nar/gkp113. Epub 2009 Mar 12. Nucleic Acids Res. 2009. PMID: 19282449 Free PMC article.
-
Nucleosome structural studies.
Tan S, Davey CA. Tan S, et al. Curr Opin Struct Biol. 2011 Feb;21(1):128-36. doi: 10.1016/j.sbi.2010.11.006. Epub 2010 Dec 19. Curr Opin Struct Biol. 2011. PMID: 21176878 Free PMC article. Review.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Molecular Biology Databases