ProtTest: selection of best-fit models of protein evolution - PubMed

ProtTest: selection of best-fit models of protein evolution

Federico Abascal et al. Bioinformatics. 2005.

Abstract

Similar articles

• Selecton: a server for detecting evolutionary forces at a single amino-acid site.

  Doron-Faigenboim A, Stern A, Mayrose I, Bacharach E, Pupko T. Doron-Faigenboim A, et al. Bioinformatics. 2005 May 1;21(9):2101-3. doi: 10.1093/bioinformatics/bti259. Epub 2005 Jan 12. Bioinformatics. 2005. PMID: 15647294

• Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach.

  Stern A, Doron-Faigenboim A, Erez E, Martz E, Bacharach E, Pupko T. Stern A, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W506-11. doi: 10.1093/nar/gkm382. Epub 2007 Jun 22. Nucleic Acids Res. 2007. PMID: 17586822 Free PMC article.

• ProtTest 3: fast selection of best-fit models of protein evolution.

  Darriba D, Taboada GL, Doallo R, Posada D. Darriba D, et al. Bioinformatics. 2011 Apr 15;27(8):1164-5. doi: 10.1093/bioinformatics/btr088. Epub 2011 Feb 17. Bioinformatics. 2011. PMID: 21335321 Free PMC article.

• State-of-the-art bioinformatics protein structure prediction tools (Review).

  Pavlopoulou A, Michalopoulos I. Pavlopoulou A, et al. Int J Mol Med. 2011 Sep;28(3):295-310. doi: 10.3892/ijmm.2011.705. Epub 2011 May 23. Int J Mol Med. 2011. PMID: 21617841 Review.

• Models of molecular evolution and phylogeny.

  Liò P, Goldman N. Liò P, et al. Genome Res. 1998 Dec;8(12):1233-44. doi: 10.1101/gr.8.12.1233. Genome Res. 1998. PMID: 9872979 Review.

Cited by

• Boronated tartrolon antibiotic produced by symbiotic cellulose-degrading bacteria in shipworm gills.

  Elshahawi SI, Trindade-Silva AE, Hanora A, Han AW, Flores MS, Vizzoni V, Schrago CG, Soares CA, Concepcion GP, Distel DL, Schmidt EW, Haygood MG. Elshahawi SI, et al. Proc Natl Acad Sci U S A. 2013 Jan 22;110(4):E295-304. doi: 10.1073/pnas.1213892110. Epub 2013 Jan 3. Proc Natl Acad Sci U S A. 2013. PMID: 23288898 Free PMC article.

• Arabidopsis homeodomain-leucine zipper IV proteins promote stomatal development and ectopically induce stomata beyond the epidermis.

  Peterson KM, Shyu C, Burr CA, Horst RJ, Kanaoka MM, Omae M, Sato Y, Torii KU. Peterson KM, et al. Development. 2013 May;140(9):1924-35. doi: 10.1242/dev.090209. Epub 2013 Mar 20. Development. 2013. PMID: 23515473 Free PMC article.

• A consistent phylogenetic backbone for the fungi.

  Ebersberger I, de Matos Simoes R, Kupczok A, Gube M, Kothe E, Voigt K, von Haeseler A. Ebersberger I, et al. Mol Biol Evol. 2012 May;29(5):1319-34. doi: 10.1093/molbev/msr285. Epub 2011 Nov 22. Mol Biol Evol. 2012. PMID: 22114356 Free PMC article.

• The Evolution of the Scavenger Receptor Cysteine-Rich Domain of the Class A Scavenger Receptors.

  Yap NV, Whelan FJ, Bowdish DM, Golding GB. Yap NV, et al. Front Immunol. 2015 Jul 6;6:342. doi: 10.3389/fimmu.2015.00342. eCollection 2015. Front Immunol. 2015. PMID: 26217337 Free PMC article.

• Modular evolution of TnGBSs, a new family of integrative and conjugative elements associating insertion sequence transposition, plasmid replication, and conjugation for their spreading.

  Guérillot R, Da Cunha V, Sauvage E, Bouchier C, Glaser P. Guérillot R, et al. J Bacteriol. 2013 May;195(9):1979-90. doi: 10.1128/JB.01745-12. Epub 2013 Feb 22. J Bacteriol. 2013. PMID: 23435978 Free PMC article.

Publication types

MeSH terms

Substances

LinkOut - more resources

• Full Text Sources

  • Ovid Technologies, Inc.
  • Silverchair Information Systems

• Other Literature Sources

  • The Lens - Patent Citations Database