Critical assessment of methods of protein structure prediction (CASP)--round 6 - PubMed
Critical assessment of methods of protein structure prediction (CASP)--round 6
John Moult et al. Proteins. 2005.
Abstract
This article is an introduction to the special issue of the journal Proteins, dedicated to the sixth CASP experiment to assess the state of the art in protein structure prediction. The article describes the conduct of the experiment and the categories of prediction included, and outlines the evaluation and assessment procedures. A brief summary of progress over the decade of CASP experiments is also provided.
2005 Wiley-Liss, Inc.
Similar articles
-
Critical assessment of methods of protein structure prediction (CASP)-round V.
Moult J, Fidelis K, Zemla A, Hubbard T. Moult J, et al. Proteins. 2003;53 Suppl 6:334-9. doi: 10.1002/prot.10556. Proteins. 2003. PMID: 14579322
-
Critical assessment of methods of protein structure prediction-Round VII.
Moult J, Fidelis K, Kryshtafovych A, Rost B, Hubbard T, Tramontano A. Moult J, et al. Proteins. 2007;69 Suppl 8(S8):3-9. doi: 10.1002/prot.21767. Proteins. 2007. PMID: 17918729 Free PMC article.
-
Critical assessment of methods of protein structure prediction - Round VIII.
Moult J, Fidelis K, Kryshtafovych A, Rost B, Tramontano A. Moult J, et al. Proteins. 2009;77 Suppl 9:1-4. doi: 10.1002/prot.22589. Proteins. 2009. PMID: 19774620
-
Protein structure prediction: challenging targets for CASP10.
Runthala A. Runthala A. J Biomol Struct Dyn. 2012;30(5):607-15. doi: 10.1080/07391102.2012.687526. Epub 2012 Jun 26. J Biomol Struct Dyn. 2012. PMID: 22731875 Review.
-
Advances and pitfalls in protein structure prediction.
Cozzetto D, Tramontano A. Cozzetto D, et al. Curr Protein Pept Sci. 2008 Dec;9(6):567-77. doi: 10.2174/138920308786733958. Curr Protein Pept Sci. 2008. PMID: 19075747 Review.
Cited by
-
High-resolution structure prediction and the crystallographic phase problem.
Qian B, Raman S, Das R, Bradley P, McCoy AJ, Read RJ, Baker D. Qian B, et al. Nature. 2007 Nov 8;450(7167):259-64. doi: 10.1038/nature06249. Epub 2007 Oct 14. Nature. 2007. PMID: 17934447 Free PMC article.
-
Designing succinct structural alphabets.
Li SC, Bu D, Gao X, Xu J, Li M. Li SC, et al. Bioinformatics. 2008 Jul 1;24(13):i182-9. doi: 10.1093/bioinformatics/btn165. Bioinformatics. 2008. PMID: 18586712 Free PMC article.
-
Toward better refinement of comparative models: predicting loops in inexact environments.
Sellers BD, Zhu K, Zhao S, Friesner RA, Jacobson MP. Sellers BD, et al. Proteins. 2008 Aug 15;72(3):959-71. doi: 10.1002/prot.21990. Proteins. 2008. PMID: 18300241 Free PMC article.
-
Improved residue contact prediction using support vector machines and a large feature set.
Cheng J, Baldi P. Cheng J, et al. BMC Bioinformatics. 2007 Apr 2;8:113. doi: 10.1186/1471-2105-8-113. BMC Bioinformatics. 2007. PMID: 17407573 Free PMC article.
-
Simulating protein folding initiation sites using an alpha-carbon-only knowledge-based force field.
Buck PM, Bystroff C. Buck PM, et al. Proteins. 2009 Aug 1;76(2):331-42. doi: 10.1002/prot.22348. Proteins. 2009. PMID: 19137613 Free PMC article.
References
REFERENCES
-
- Moult J, Pedersen JT, Judson R, Fidelis K. A large-scale experiment to assess protein structure prediction methods. Proteins 1995; 23: ii-v.
-
- Moult J, Hubbard T, Bryant SH, Fidelis K, Pedersen JT. Critical assessment of methods of protein structure prediction (CASP): round II. Proteins 1997; 29(Suppl 1): 2-6.
-
- Moult J, Hubbard T, Fidelis K, Pedersen JT. Critical assessment of methods of protein structure prediction (CASP): round III. Proteins 1999; 37(Suppl 3): 2-6.
-
- Moult J, Fidelis K, Zemla A, Hubbard T. Critical assessment of methods of protein structure prediction (CASP): round IV. Proteins 2001; 45(Suppl 5): 2-7.
-
- Moult J, Fidelis K, Zemla A, Hubbard T. Critical assessment of methods of protein structure prediction (CASP)-round V. Proteins 2003; 53(Suppl 6): 334-339.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources