Gepard: a rapid and sensitive tool for creating dotplots on genome scale - PubMed

Gepard: a rapid and sensitive tool for creating dotplots on genome scale

Jan Krumsiek et al. Bioinformatics. 2007.

Abstract

Similar articles

• PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.

  Hanekamp K, Bohnebeck U, Beszteri B, Valentin K. Hanekamp K, et al. Bioinformatics. 2007 Apr 1;23(7):793-801. doi: 10.1093/bioinformatics/btm016. Epub 2007 Mar 1. Bioinformatics. 2007. PMID: 17332025

• Idiographica: a general-purpose web application to build idiograms on-demand for human, mouse and rat.

  Kin T, Ono Y. Kin T, et al. Bioinformatics. 2007 Nov 1;23(21):2945-6. doi: 10.1093/bioinformatics/btm455. Epub 2007 Sep 24. Bioinformatics. 2007. PMID: 17893084

• TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities.

  Gu S, Anderson I, Kunin V, Cipriano M, Minovitsky S, Weber G, Amenta N, Hamann B, Dubchak I. Gu S, et al. Bioinformatics. 2007 Mar 15;23(6):764-6. doi: 10.1093/bioinformatics/btl643. Epub 2007 Jan 17. Bioinformatics. 2007. PMID: 17234642

• SynView: a GBrowse-compatible approach to visualizing comparative genome data.

  Wang H, Su Y, Mackey AJ, Kraemer ET, Kissinger JC. Wang H, et al. Bioinformatics. 2006 Sep 15;22(18):2308-9. doi: 10.1093/bioinformatics/btl389. Epub 2006 Jul 14. Bioinformatics. 2006. PMID: 16844709

• UCSC genome browser: deep support for molecular biomedical research.

  Mangan ME, Williams JM, Lathe SM, Karolchik D, Lathe WC 3rd. Mangan ME, et al. Biotechnol Annu Rev. 2008;14:63-108. doi: 10.1016/S1387-2656(08)00003-3. Biotechnol Annu Rev. 2008. PMID: 18606360 Review.

Cited by

• ZikaVR: An Integrated Zika Virus Resource for Genomics, Proteomics, Phylogenetic and Therapeutic Analysis.

  Gupta AK, Kaur K, Rajput A, Dhanda SK, Sehgal M, Khan MS, Monga I, Dar SA, Singh S, Nagpal G, Usmani SS, Thakur A, Kaur G, Sharma S, Bhardwaj A, Qureshi A, Raghava GP, Kumar M. Gupta AK, et al. Sci Rep. 2016 Sep 16;6:32713. doi: 10.1038/srep32713. Sci Rep. 2016. PMID: 27633273 Free PMC article.

• Complete telomere-to-telomere de novo assembly of the Plasmodium falciparum genome through long-read (>11 kb), single molecule, real-time sequencing.

  Vembar SS, Seetin M, Lambert C, Nattestad M, Schatz MC, Baybayan P, Scherf A, Smith ML. Vembar SS, et al. DNA Res. 2016 Aug;23(4):339-51. doi: 10.1093/dnares/dsw022. Epub 2016 Jun 26. DNA Res. 2016. PMID: 27345719 Free PMC article.

• Dissection of Structural Reorganization of Wheat 5B Chromosome Associated With Interspecies Recombination Suppression.

  Salina E, Muterko A, Kiseleva A, Liu Z, Korol A. Salina E, et al. Front Plant Sci. 2022 May 4;13:884632. doi: 10.3389/fpls.2022.884632. eCollection 2022. Front Plant Sci. 2022. PMID: 36340334 Free PMC article.

• Characterization and Complete Genome Sequences of Three N4-Like Roseobacter Phages Isolated from the South China Sea.

  Li B, Zhang S, Long L, Huang S. Li B, et al. Curr Microbiol. 2016 Sep;73(3):409-418. doi: 10.1007/s00284-016-1071-3. Epub 2016 Jun 7. Curr Microbiol. 2016. PMID: 27270945

• Phage cluster relationships identified through single gene analysis.

  Smith KC, Castro-Nallar E, Fisher JN, Breakwell DP, Grose JH, Burnett SH. Smith KC, et al. BMC Genomics. 2013 Jun 19;14:410. doi: 10.1186/1471-2164-14-410. BMC Genomics. 2013. PMID: 23777341 Free PMC article.

MeSH terms

LinkOut - more resources

• Full Text Sources

  • Ovid Technologies, Inc.
  • Silverchair Information Systems

• Other Literature Sources

  • The Lens - Patent Citations Database

• Molecular Biology Databases

  • NIAID Data Ecosystem - Find datasets on Infectious and Immune-mediated Diseases