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Database resources of the National Center for Biotechnology Information - PubMed

Database resources of the National Center for Biotechnology Information

David L Wheeler et al. Nucleic Acids Res. 2008 Jan.

Abstract

In addition to maintaining the GenBank(R) nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data available through NCBI's web site. NCBI resources include Entrez, the Entrez Programming Utilities, My NCBI, PubMed, PubMed Central, Entrez Gene, the NCBI Taxonomy Browser, BLAST, BLAST Link, Electronic PCR, OrfFinder, Spidey, Splign, RefSeq, UniGene, HomoloGene, ProtEST, dbMHC, dbSNP, Cancer Chromosomes, Entrez Genome, Genome Project and related tools, the Trace, Assembly, and Short Read Archives, the Map Viewer, Model Maker, Evidence Viewer, Clusters of Orthologous Groups, Influenza Viral Resources, HIV-1/Human Protein Interaction Database, Gene Expression Omnibus, Entrez Probe, GENSAT, Database of Genotype and Phenotype, Online Mendelian Inheritance in Man, Online Mendelian Inheritance in Animals, the Molecular Modeling Database, the Conserved Domain Database, the Conserved Domain Architecture Retrieval Tool and the PubChem suite of small molecule databases. Augmenting the web applications are custom implementations of the BLAST program optimized to search specialized data sets. These resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov.

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References

    1. Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. Nucleic Acids Res. 2008. GenBank. Database issue, in press. - PMC - PubMed
    1. Group TGCR, Manolio TA, Rodriguez LL, Brooks L, Abecasis G, the International Multi-Center ADHD Genetics Project. Ballinger D, Daly M, Donnelly P, et al. New models of collaboration in genome-wide association studies: the Genetic Association Information Network. Nat. Genet. 2007;39:1045–1051. - PubMed
    1. The Age-Related Eye Disease Study Research Group. The Age-Related Eye Disease Study (AREDS): design implications. AREDS report no. 1. Control Clin. Trials. 1999;20:573–600. - PMC - PubMed
    1. Fung HC, Scholz S, Matarin M, Simón-Sánchez J, Hernandez D, Britton A, Gibbs JR, Langefeld C, Stiegert ML, et al. Genome-wide genotyping in Parkinson's disease and neurologically normal controls: first stage analysis and public release of data. Lancet Neurol. 2006;5:911–916. - PubMed
    1. Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, et al. The COG database: an updated version includes eukaryotes. BMC Bioinformatics. 2003;4:41–41. - PMC - PubMed

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