The RNA WikiProject: community annotation of RNA families - PubMed
The RNA WikiProject: community annotation of RNA families
Jennifer Daub et al. RNA. 2008 Dec.
Abstract
The online encyclopedia Wikipedia has become one of the most important online references in the world and has a substantial and growing scientific content. A search of Google with many RNA-related keywords identifies a Wikipedia article as the top hit. We believe that the RNA community has an important and timely opportunity to maximize the content and quality of RNA information in Wikipedia. To this end, we have formed the RNA WikiProject (http://en.wikipedia.org/wiki/Wikipedia:WikiProject_RNA) as part of the larger Molecular and Cellular Biology WikiProject. We have created over 600 new Wikipedia articles describing families of noncoding RNAs based on the Rfam database, and invite the community to update, edit, and correct these articles. The Rfam database now redistributes this Wikipedia content as the primary textual annotation of its RNA families. Users can, therefore, for the first time, directly edit the content of one of the major RNA databases. We believe that this Wikipedia/Rfam link acts as a functioning model for incorporating community annotation into molecular biology databases.
Similar articles
-
Rfam: Wikipedia, clans and the "decimal" release.
Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, Griffiths-Jones S, Finn RD, Nawrocki EP, Kolbe DL, Eddy SR, Bateman A. Gardner PP, et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D141-5. doi: 10.1093/nar/gkq1129. Epub 2010 Nov 9. Nucleic Acids Res. 2011. PMID: 21062808 Free PMC article.
-
Rfam 12.0: updates to the RNA families database.
Nawrocki EP, Burge SW, Bateman A, Daub J, Eberhardt RY, Eddy SR, Floden EW, Gardner PP, Jones TA, Tate J, Finn RD. Nawrocki EP, et al. Nucleic Acids Res. 2015 Jan;43(Database issue):D130-7. doi: 10.1093/nar/gku1063. Epub 2014 Nov 11. Nucleic Acids Res. 2015. PMID: 25392425 Free PMC article.
-
The Gene Wiki in 2011: community intelligence applied to human gene annotation.
Good BM, Clarke EL, de Alfaro L, Su AI. Good BM, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D1255-61. doi: 10.1093/nar/gkr925. Epub 2011 Nov 10. Nucleic Acids Res. 2012. PMID: 22075991 Free PMC article.
-
An introduction to RNA databases.
Hoeppner MP, Barquist LE, Gardner PP. Hoeppner MP, et al. Methods Mol Biol. 2014;1097:107-23. doi: 10.1007/978-1-62703-709-9_6. Methods Mol Biol. 2014. PMID: 24639157 Review.
-
Informatics in radiology: RadiologyWiki.org: the free radiology resource that anyone can edit.
Streeter JL, Lu MT, Rybicki FJ. Streeter JL, et al. Radiographics. 2007 Jul-Aug;27(4):1193-200. doi: 10.1148/rg.274065090. Radiographics. 2007. PMID: 17620476 Review.
Cited by
-
Chen IM, Markowitz VM, Palaniappan K, Szeto E, Chu K, Huang J, Ratner A, Pillay M, Hadjithomas M, Huntemann M, Mikhailova N, Ovchinnikova G, Ivanova NN, Kyrpides NC. Chen IM, et al. BMC Genomics. 2016 Apr 26;17:307. doi: 10.1186/s12864-016-2629-y. BMC Genomics. 2016. PMID: 27118214 Free PMC article.
-
Origin and evolution of the ribosome.
Fox GE. Fox GE. Cold Spring Harb Perspect Biol. 2010 Sep;2(9):a003483. doi: 10.1101/cshperspect.a003483. Epub 2010 Jun 9. Cold Spring Harb Perspect Biol. 2010. PMID: 20534711 Free PMC article. Review.
-
The Gene Wiki: community intelligence applied to human gene annotation.
Huss JW 3rd, Lindenbaum P, Martone M, Roberts D, Pizarro A, Valafar F, Hogenesch JB, Su AI. Huss JW 3rd, et al. Nucleic Acids Res. 2010 Jan;38(Database issue):D633-9. doi: 10.1093/nar/gkp760. Epub 2009 Sep 15. Nucleic Acids Res. 2010. PMID: 19755503 Free PMC article.
-
GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycle.
Lardenois A, Gattiker A, Collin O, Chalmel F, Primig M. Lardenois A, et al. Database (Oxford). 2010 Dec 11;2010:baq030. doi: 10.1093/database/baq030. Print 2010. Database (Oxford). 2010. PMID: 21149299 Free PMC article.
-
The Pfam protein families database.
Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, Boursnell C, Pang N, Forslund K, Ceric G, Clements J, Heger A, Holm L, Sonnhammer EL, Eddy SR, Bateman A, Finn RD. Punta M, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D290-301. doi: 10.1093/nar/gkr1065. Epub 2011 Nov 29. Nucleic Acids Res. 2012. PMID: 22127870 Free PMC article.
References
-
- Giles J. Internet encyclopedias go head to head. Nature. 2005;438:900–901. - PubMed
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
Research Materials