Rapidly evolving fish genomes and teleost diversity - PubMed
- ️Invalid Date
Review
Rapidly evolving fish genomes and teleost diversity
Vydianathan Ravi et al. Curr Opin Genet Dev. 2008 Dec.
Abstract
Teleost fishes are the largest and most diverse group of vertebrates. The diversity of teleosts has been attributed to a whole-genome duplication (WGD) event in the ray-finned fish lineage. Recent comparative genomic studies have revealed that teleost genomes have experienced frequent gene-linkage disruptions compared to other vertebrates, and that protein-coding sequences in teleosts are evolving faster than in mammals, irrespective of their duplication status. A significant number of conserved noncoding elements (CNEs) shared between cartilaginous fishes and tetrapods have diverged beyond recognition in teleost fishes. The divergence of CNEs seems to have been initiated in basal ray-finned fishes before the WGD. The fast evolving singleton and duplicated genes as well as the divergent CNEs might have contributed to the diversity of teleost fishes.
Similar articles
-
Ancient vertebrate conserved noncoding elements have been evolving rapidly in teleost fishes.
Lee AP, Kerk SY, Tan YY, Brenner S, Venkatesh B. Lee AP, et al. Mol Biol Evol. 2011 Mar;28(3):1205-15. doi: 10.1093/molbev/msq304. Epub 2010 Nov 15. Mol Biol Evol. 2011. PMID: 21081479
-
From 2R to 3R: evidence for a fish-specific genome duplication (FSGD).
Meyer A, Van de Peer Y. Meyer A, et al. Bioessays. 2005 Sep;27(9):937-45. doi: 10.1002/bies.20293. Bioessays. 2005. PMID: 16108068 Review.
-
Expansion by whole genome duplication and evolution of the sox gene family in teleost fish.
Voldoire E, Brunet F, Naville M, Volff JN, Galiana D. Voldoire E, et al. PLoS One. 2017 Jul 24;12(7):e0180936. doi: 10.1371/journal.pone.0180936. eCollection 2017. PLoS One. 2017. PMID: 28738066 Free PMC article.
-
Braasch I, Salzburger W, Meyer A. Braasch I, et al. Mol Biol Evol. 2006 Jun;23(6):1192-202. doi: 10.1093/molbev/msk003. Epub 2006 Mar 17. Mol Biol Evol. 2006. PMID: 16547150
-
The Divergent Genomes of Teleosts.
Ravi V, Venkatesh B. Ravi V, et al. Annu Rev Anim Biosci. 2018 Feb 15;6:47-68. doi: 10.1146/annurev-animal-030117-014821. Annu Rev Anim Biosci. 2018. PMID: 29447475 Review.
Cited by
-
Li H, Cai Y, Xie P, Li G, Hao L, Xiong Q. Li H, et al. Arch Environ Contam Toxicol. 2013 Oct;65(3):537-45. doi: 10.1007/s00244-013-9910-8. Epub 2013 Jun 25. Arch Environ Contam Toxicol. 2013. PMID: 23797979 Free PMC article.
-
The Melanin-Concentrating Hormone (MCH) System: A Tale of Two Peptides.
Diniz GB, Bittencourt JC. Diniz GB, et al. Front Neurosci. 2019 Nov 26;13:1280. doi: 10.3389/fnins.2019.01280. eCollection 2019. Front Neurosci. 2019. PMID: 31849590 Free PMC article. Review.
-
Optic cup morphogenesis across species and related inborn human eye defects.
Cardozo MJ, Sánchez-Bustamante E, Bovolenta P. Cardozo MJ, et al. Development. 2023 Jan 15;150(2):dev200399. doi: 10.1242/dev.200399. Epub 2023 Jan 30. Development. 2023. PMID: 36714981 Free PMC article. Review.
-
The sequence and de novo assembly of Oxygymnocypris stewartii genome.
Liu HP, Xiao SJ, Wu N, Wang D, Liu YC, Zhou CW, Liu QY, Yang RB, Jiang WK, Liang QQ, Wangjiu, Zhang C, Gong JH, Yuan XH, Mou ZB. Liu HP, et al. Sci Data. 2019 Feb 5;6:190009. doi: 10.1038/sdata.2019.9. Sci Data. 2019. PMID: 30720802 Free PMC article.
-
Jiang Y, Gao X, Liu S, Zhang Y, Liu H, Sun F, Bao L, Waldbieser G, Liu Z. Jiang Y, et al. BMC Genomics. 2013 Nov 11;14:780. doi: 10.1186/1471-2164-14-780. BMC Genomics. 2013. PMID: 24215161 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources