Early divergent strains of Yersinia pestis in Eurasia 5,000 years ago - PubMed

Phylogenetic and genomic analysis reveals high genomic openness and genetic diversity of Clostridium perfringens.

Feng Y, Fan X, Zhu L, Yang X, Liu Y, Gao S, Jin X, Liu D, Ding J, Guo Y, Hu Y. Feng Y, et al. Microb Genom. 2020 Oct;6(10):mgen000441. doi: 10.1099/mgen.0.000441. Microb Genom. 2020. PMID: 32975504 Free PMC article.

Microbial evolution and transitions along the parasite-mutualist continuum.

Drew GC, Stevens EJ, King KC. Drew GC, et al. Nat Rev Microbiol. 2021 Oct;19(10):623-638. doi: 10.1038/s41579-021-00550-7. Epub 2021 Apr 19. Nat Rev Microbiol. 2021. PMID: 33875863 Free PMC article. Review.

A High-Coverage Yersinia pestis Genome from a Sixth-Century Justinianic Plague Victim.

Feldman M, Harbeck M, Keller M, Spyrou MA, Rott A, Trautmann B, Scholz HC, Päffgen B, Peters J, McCormick M, Bos K, Herbig A, Krause J. Feldman M, et al. Mol Biol Evol. 2016 Nov;33(11):2911-2923. doi: 10.1093/molbev/msw170. Epub 2016 Aug 30. Mol Biol Evol. 2016. PMID: 27578768 Free PMC article.

Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species.

Manara S, Asnicar F, Beghini F, Bazzani D, Cumbo F, Zolfo M, Nigro E, Karcher N, Manghi P, Metzger MI, Pasolli E, Segata N. Manara S, et al. Genome Biol. 2019 Dec 28;20(1):299. doi: 10.1186/s13059-019-1923-9. Genome Biol. 2019. PMID: 31883524 Free PMC article.

The Beaker phenomenon and the genomic transformation of northwest Europe.

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