Origins and structural properties of novel and de novo protein domains during insect evolution - PubMed

A putative scenario of how de novo protein-coding genes originate in the Saccharomyces cerevisiae lineage.

Yada T, Taniguchi T. Yada T, et al. BMC Genomics. 2024 Sep 5;25(Suppl 3):834. doi: 10.1186/s12864-024-10669-5. BMC Genomics. 2024. PMID: 39237856 Free PMC article.

Transposons contribute to the functional diversification of the head, gut, and ovary transcriptomes across Drosophila natural strains.

Coronado-Zamora M, González J. Coronado-Zamora M, et al. Genome Res. 2023 Sep;33(9):1541-1553. doi: 10.1101/gr.277565.122. Epub 2023 Oct 4. Genome Res. 2023. PMID: 37793782 Free PMC article.

Evolution of novel genes in three-spined stickleback populations.

Schmitz JF, Chain FJJ, Bornberg-Bauer E. Schmitz JF, et al. Heredity (Edinb). 2020 Aug;125(1-2):50-59. doi: 10.1038/s41437-020-0319-7. Epub 2020 Jun 4. Heredity (Edinb). 2020. PMID: 32499660 Free PMC article.

Sequence, Structure, and Functional Space of Drosophila De Novo Proteins.

Middendorf L, Ravi Iyengar B, Eicholt LA. Middendorf L, et al. Genome Biol Evol. 2024 Aug 5;16(8):evae176. doi: 10.1093/gbe/evae176. Genome Biol Evol. 2024. PMID: 39212966 Free PMC article.

Gene content evolution in the arthropods.

Thomas GWC, Dohmen E, Hughes DST, Murali SC, Poelchau M, Glastad K, Anstead CA, Ayoub NA, Batterham P, Bellair M, Binford GJ, Chao H, Chen YH, Childers C, Dinh H, Doddapaneni HV, Duan JJ, Dugan S, Esposito LA, Friedrich M, Garb J, Gasser RB, Goodisman MAD, Gundersen-Rindal DE, Han Y, Handler AM, Hatakeyama M, Hering L, Hunter WB, Ioannidis P, Jayaseelan JC, Kalra D, Khila A, Korhonen PK, Lee CE, Lee SL, Li Y, Lindsey ARI, Mayer G, McGregor AP, McKenna DD, Misof B, Munidasa M, Munoz-Torres M, Muzny DM, Niehuis O, Osuji-Lacy N, Palli SR, Panfilio KA, Pechmann M, Perry T, Peters RS, Poynton HC, Prpic NM, Qu J, Rotenberg D, Schal C, Schoville SD, Scully ED, Skinner E, Sloan DB, Stouthamer R, Strand MR, Szucsich NU, Wijeratne A, Young ND, Zattara EE, Benoit JB, Zdobnov EM, Pfrender ME, Hackett KJ, Werren JH, Worley KC, Gibbs RA, Chipman AD, Waterhouse RM, Bornberg-Bauer E, Hahn MW, Richards S. Thomas GWC, et al. Genome Biol. 2020 Jan 23;21(1):15. doi: 10.1186/s13059-019-1925-7. Genome Biol. 2020. PMID: 31969194 Free PMC article.