Computer visualization of three-dimensional image data using IMOD - PubMed

Affiliations

• PMID: 8742726
• DOI: 10.1006/jsbi.1996.0013

Computer visualization of three-dimensional image data using IMOD

J R Kremer et al. J Struct Biol. 1996 Jan-Feb.

Abstract

We have developed a computer software package, IMOD, as a tool for analyzing and viewing three-dimensional biological image data. IMOD is useful for studying and modeling data from tomographic, serial section, and optical section reconstructions. The software allows image data to be visualized by several different methods. Models of the image data can be visualized by volume or contour surface rendering and can yield quantitative information.

Similar articles

• Sterecon--three-dimensional reconstructions from stereoscopic contouring.

  Marko M, Leith A. Marko M, et al. J Struct Biol. 1996 Jan-Feb;116(1):93-8. doi: 10.1006/jsbi.1996.0016. J Struct Biol. 1996. PMID: 8742729

• Three-dimensional interactive graphics for displaying and modelling microscopic data.

  Basinski M, Deatherage JF. Basinski M, et al. Ultramicroscopy. 1990 Sep;33(3):167-75. doi: 10.1016/0304-3991(90)90109-y. Ultramicroscopy. 1990. PMID: 2260228

• A flexible environment for the visualization of three-dimensional biological structures.

  Hessler D, Young SJ, Ellisman MH. Hessler D, et al. J Struct Biol. 1996 Jan-Feb;116(1):113-9. doi: 10.1006/jsbi.1996.0019. J Struct Biol. 1996. PMID: 8742732

• Electron tomography of ER, Golgi and related membrane systems.

  Donohoe BS, Mogelsvang S, Staehelin LA. Donohoe BS, et al. Methods. 2006 Jun;39(2):154-62. doi: 10.1016/j.ymeth.2006.05.013. Methods. 2006. PMID: 16854591 Review.

• Approaches to large-scale structures.

  Frank J. Frank J. Curr Opin Struct Biol. 1995 Apr;5(2):194-201. doi: 10.1016/0959-440x(95)80075-1. Curr Opin Struct Biol. 1995. PMID: 7648321 Review.

Cited by

• One of the nine doublet microtubules of eukaryotic flagella exhibits unique and partially conserved structures.

  Lin J, Heuser T, Song K, Fu X, Nicastro D. Lin J, et al. PLoS One. 2012;7(10):e46494. doi: 10.1371/journal.pone.0046494. Epub 2012 Oct 10. PLoS One. 2012. PMID: 23071579 Free PMC article.

• Integrins Increase Sarcoplasmic Reticulum Activity for Excitation-Contraction Coupling in Human Stem Cell-Derived Cardiomyocytes.

  Wang BX, Kane C, Nicastro L, King O, Kit-Anan W, Downing B, Deidda G, Couch LS, Pinali C, Mitraki A, MacLeod KT, Terracciano CM. Wang BX, et al. Int J Mol Sci. 2022 Sep 19;23(18):10940. doi: 10.3390/ijms231810940. Int J Mol Sci. 2022. PMID: 36142853 Free PMC article.

• Direct three-dimensional visualization of membrane disruption by amyloid fibrils.

  Milanesi L, Sheynis T, Xue WF, Orlova EV, Hellewell AL, Jelinek R, Hewitt EW, Radford SE, Saibil HR. Milanesi L, et al. Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20455-60. doi: 10.1073/pnas.1206325109. Epub 2012 Nov 26. Proc Natl Acad Sci U S A. 2012. PMID: 23184970 Free PMC article.

• PDZD8 interacts with Protrudin and Rab7 at ER-late endosome membrane contact sites associated with mitochondria.

  Elbaz-Alon Y, Guo Y, Segev N, Harel M, Quinnell DE, Geiger T, Avinoam O, Li D, Nunnari J. Elbaz-Alon Y, et al. Nat Commun. 2020 Jul 20;11(1):3645. doi: 10.1038/s41467-020-17451-7. Nat Commun. 2020. PMID: 32686675 Free PMC article.

• Protein P7 of the cystovirus φ6 is located at the three-fold axis of the unexpanded procapsid.

  Katz G, Wei H, Alimova A, Katz A, Morgan DG, Gottlieb P. Katz G, et al. PLoS One. 2012;7(10):e47489. doi: 10.1371/journal.pone.0047489. Epub 2012 Oct 15. PLoS One. 2012. PMID: 23077625 Free PMC article.

Publication types

MeSH terms

LinkOut - more resources

• Full Text Sources

  • Elsevier Science

• Other Literature Sources

  • The Lens - Patent Citations Database

• Molecular Biology Databases

  • NIAID Data Ecosystem - Find datasets on Infectious and Immune-mediated Diseases