Models for prediction and recognition of eukaryotic promoters - PubMed

Review

Models for prediction and recognition of eukaryotic promoters

T Werner. Mamm Genome. 1999 Feb.

Similar articles

• Recognition of prokaryotic and eukaryotic promoters using convolutional deep learning neural networks.

  Umarov RK, Solovyev VV. Umarov RK, et al. PLoS One. 2017 Feb 3;12(2):e0171410. doi: 10.1371/journal.pone.0171410. eCollection 2017. PLoS One. 2017. PMID: 28158264 Free PMC article.

• Eukaryotic regulatory elements lurking in plasmid DNA: the activator protein-1 site in pUC.

  Kushner PJ, Baxter JD, Duncan KG, Lopez GN, Schaufele F, Uht RM, Webb P, West BL. Kushner PJ, et al. Mol Endocrinol. 1994 Apr;8(4):405-7. doi: 10.1210/mend.8.4.8052261. Mol Endocrinol. 1994. PMID: 8052261 Review. No abstract available.

• ARGO: a web system for the detection of degenerate motifs and large-scale recognition of eukaryotic promoters.

  Vishnevsky OV, Kolchanov NA. Vishnevsky OV, et al. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W417-22. doi: 10.1093/nar/gki459. Nucleic Acids Res. 2005. PMID: 15980502 Free PMC article.

• At the center of eukaryotic life.

  Moss T, Stefanovsky VY. Moss T, et al. Cell. 2002 May 31;109(5):545-8. doi: 10.1016/s0092-8674(02)00761-4. Cell. 2002. PMID: 12062097 Review.

• The evolutionary conservation of eukaryotic gene transcription.

  Schena M. Schena M. Experientia. 1989 Oct 15;45(10):972-83. doi: 10.1007/BF01953055. Experientia. 1989. PMID: 2680577 Review.

Cited by

• Direct vs 2-stage approaches to structured motif finding.

  Federico M, Leoncini M, Montangero M, Valente P. Federico M, et al. Algorithms Mol Biol. 2012 Aug 21;7(1):20. doi: 10.1186/1748-7188-7-20. Algorithms Mol Biol. 2012. PMID: 22908910 Free PMC article.

• Detection and visualization of compositionally similar cis-regulatory element clusters in orthologous and coordinately controlled genes.

  Jegga AG, Sherwood SP, Carman JW, Pinski AT, Phillips JL, Pestian JP, Aronow BJ. Jegga AG, et al. Genome Res. 2002 Sep;12(9):1408-17. doi: 10.1101/gr.255002. Genome Res. 2002. PMID: 12213778 Free PMC article.

• PromH: Promoters identification using orthologous genomic sequences.

  Solovyev VV, Shahmuradov IA. Solovyev VV, et al. Nucleic Acids Res. 2003 Jul 1;31(13):3540-5. doi: 10.1093/nar/gkg525. Nucleic Acids Res. 2003. PMID: 12824362 Free PMC article.

• Transcriptional regulation of NADP-dependent malate dehydrogenase: comparative genetics and identification of DNA-binding proteins.

  Hameister S, Becker B, Holtgrefe S, Strodtkötter I, Linke V, Backhausen JE, Scheibe R. Hameister S, et al. J Mol Evol. 2007 Oct;65(4):437-55. doi: 10.1007/s00239-007-9025-9. Epub 2007 Oct 10. J Mol Evol. 2007. PMID: 17925997

• From sequence to structure and back again: approaches for predicting protein-DNA binding.

  Höglund A, Kohlbacher O. Höglund A, et al. Proteome Sci. 2004 Jun 17;2(1):3. doi: 10.1186/1477-5956-2-3. Proteome Sci. 2004. PMID: 15202939 Free PMC article.

Publication types

MeSH terms

LinkOut - more resources

• Full Text Sources

  • Springer

• Other Literature Sources

  • The Lens - Patent Citations Database