RCSB PDB - 1BFC: BASIC FIBROBLAST GROWTH FACTOR COMPLEXED WITH HEPARIN HEXAMER FRAGMENT
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BASIC FIBROBLAST GROWTH FACTOR COMPLEXED WITH HEPARIN HEXAMER FRAGMENT
This is version 2.2 of the entry. See complete history.
Heparin structure and interactions with basic fibroblast growth factor.
Faham, S., Hileman, R.E., Fromm, J.R., Linhardt, R.J., Rees, D.C.
(1996) Science 271: 1116-1120
- PubMed: 8599088 Search on PubMed
- DOI: https://doi.org/10.1126/science.271.5252.1116
- PubMed Abstract:
Crystal structures of heparin-derived tetra- and hexasaccharides complexed with basic fibroblast growth factor (bFGF) were determined at resolutions of 1.9 and 2.2 angstroms, respectively. The heparin structure may be approximated as a helical polymer with a disaccharide rotation of 174 degrees and a translation of 8.6 angstroms along the helix axis. Both molecules bound similarly to a region of the bFGF surface containing residues asparagine-28, arginine-121, lysine-126, and glutamine-135, the hexasaccharide also interacted with an additional binding site formed by lysine-27, asparagine-102, and lysine-136. No significant conformational change in bFGF occurred upon heparin oligosaccharide binding, which suggests that heparin primarily serves to juxtapose components of the FGF signal transduction pathway.
Organizational Affiliation:
Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Macromolecule Content
- Total Structure Weight: 18.25 kDa
- Atom Count: 1,114
- Modelled Residue Count: 124
- Deposited Residue Count: 147
- Unique protein chains: 1
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
4-deoxy-2-O-sulfo-alpha-L-threo-hex-4-enopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose | B | 6 | N/A | ||
Glycosylation Resources | |||||
GlyTouCan: G26920WX GlyCosmos: G26920WX |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Work: 0.188 (Depositor)
- R-Value Observed: 0.188 (Depositor)
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 33.15 | α = 90 |
b = 41.8 | β = 90 |
c = 85.9 | γ = 90 |
Software Package:
Software Name | Purpose |
---|---|
X-PLOR | model building |
X-PLOR | refinement |
XDS | data reduction |
X-PLOR | phasing |
Revision History (Full details and data files)
- Version 1.0: 1996-04-03
Type: Initial release - Version 1.1: 2008-03-24
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Other, Structure summary - Version 2.1: 2021-11-03
Changes: Database references, Structure summary - Version 2.2: 2024-02-07
Changes: Data collection