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RCSB PDB - 1BFC: BASIC FIBROBLAST GROWTH FACTOR COMPLEXED WITH HEPARIN HEXAMER FRAGMENT

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BASIC FIBROBLAST GROWTH FACTOR COMPLEXED WITH HEPARIN HEXAMER FRAGMENT




    This is version 2.2 of the entry. See complete history



    Heparin structure and interactions with basic fibroblast growth factor.

    Faham, S.Hileman, R.E.Fromm, J.R.Linhardt, R.J.Rees, D.C.

    (1996) Science 271: 1116-1120

    • PubMed8599088 Search on PubMed
    • DOI: https://doi.org/10.1126/science.271.5252.1116

    • PubMed Abstract: 

      Crystal structures of heparin-derived tetra- and hexasaccharides complexed with basic fibroblast growth factor (bFGF) were determined at resolutions of 1.9 and 2.2 angstroms, respectively. The heparin structure may be approximated as a helical polymer with a disaccharide rotation of 174 degrees and a translation of 8.6 angstroms along the helix axis. Both molecules bound similarly to a region of the bFGF surface containing residues asparagine-28, arginine-121, lysine-126, and glutamine-135, the hexasaccharide also interacted with an additional binding site formed by lysine-27, asparagine-102, and lysine-136. No significant conformational change in bFGF occurred upon heparin oligosaccharide binding, which suggests that heparin primarily serves to juxtapose components of the FGF signal transduction pathway.


    • Organizational Affiliation

      Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA.

    Macromolecule Content

    • Total Structure Weight: 18.25 kDa 
    • Atom Count: 1,114 
    • Modelled Residue Count: 124 
    • Deposited Residue Count: 147 
    • Unique protein chains: 1

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    Entity ID: 2
    MoleculeChains Length2D Diagram Glycosylation3D Interactions
    4-deoxy-2-O-sulfo-alpha-L-threo-hex-4-enopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose

    B

    6N/A
    Glycosylation Resources

    GlyTouCan:  G26920WX

    GlyCosmos:  G26920WX

    Experimental Data & Validation

    Experimental Data

    • Method: X-RAY DIFFRACTION
    • Resolution: 2.20 Å
    • R-Value Work:  0.188 (Depositor) 
    • R-Value Observed: 0.188 (Depositor) 

    Unit Cell:

    Length ( Å )Angle ( ˚ )
    a = 33.15α = 90
    b = 41.8β = 90
    c = 85.9γ = 90

    Software Package:

    Software NamePurpose
    X-PLORmodel building
    X-PLORrefinement
    XDSdata reduction
    X-PLORphasing

    Revision History  (Full details and data files)

    • Version 1.0: 1996-04-03
      Type: Initial release
    • Version 1.1: 2008-03-24
      Changes: Version format compliance
    • Version 1.2: 2011-07-13
      Changes: Non-polymer description, Version format compliance
    • Version 2.0: 2020-07-29
      Type: Remediation
      Reason: Carbohydrate remediation
      Changes: Atomic model, Data collection, Derived calculations, Other, Structure summary
    • Version 2.1: 2021-11-03
      Changes: Database references, Structure summary
    • Version 2.2: 2024-02-07
      Changes: Data collection