RCSB PDB - 1QMQ: Optical detection of cytochrome P450 by sensitizer-linked substrates
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Optical detection of cytochrome P450 by sensitizer-linked substrates
This is version 2.1 of the entry. See complete history.
Optical Detection of Cytochrome P450 by Sensitizer-Linked Substrates
Dmochowski, I.J., Crane, B.R., Wilker, J.J., Winkler, J.R., Gray, H.B.
(1999) Proc Natl Acad Sci U S A 96: 12987
- PubMed: 10557259 Search on PubMedSearch on PubMed Central
- DOI: https://doi.org/10.1073/pnas.96.23.12987
- PubMed Abstract:
The ability to detect, characterize, and manipulate specific biomolecules in complex media is critical for understanding metabolic processes. Particularly important targets are oxygenases (cytochromes P450) involved in drug metabolism and many disease states, including liver and kidney dysfunction, neurological disorders, and cancer. We have found that Ru photosensitizers linked to P450 substrates specifically recognize submicromolar cytochrome P450(cam) in the presence of other heme proteins. In the P450:Ru-substrate conjugates, energy transfer to the heme dramatically accelerates the Ru-luminescence decay. The crystal structure of a P450(cam):Ru-adamantyl complex reveals access to the active center via a channel whose depth (Ru-Fe distance is 21 A) is virtually the same as that extracted from an analysis of the energy-transfer kinetics. Suitably constructed libraries of sensitizer-linked substrates could be employed to probe the steric and electronic properties of buried active sites.
Organizational Affiliation:
Beckman Institute, California Institute of Technology, Pasadena, CA 91125, USA.
Macromolecule Content
- Total Structure Weight: 49.21 kDa
- Atom Count: 4,017
- Modelled Residue Count: 406
- Deposited Residue Count: 414
- Unique protein chains: 1
Find similar proteins by:
(by identity cutoff) | 3D Structure
Experimental Data & Validation
Experimental Data
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 65.39 | α = 90 |
b = 74.47 | β = 90 |
c = 91.73 | γ = 90 |
Software Package:
Software Name | Purpose |
---|---|
CNS | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
CNS | phasing |
Revision History (Full details and data files)
- Version 1.0: 2000-10-06
Type: Initial release - Version 1.1: 2012-03-28
Changes: Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Other, Refinement description, Structure summary, Version format compliance - Version 2.0: 2018-10-03
Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary - Version 2.1: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Refinement description